WormBase Tree Display for Gene: WBGene00019767
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WBGene00019767 | SMap | S_parent | Sequence | M04F3 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | rpa-2 | |||||
Sequence_name | M04F3.1 | ||||||
Molecular_name | M04F3.1 | ||||||
M04F3.1.1 | |||||||
CE12414 | |||||||
Other_name | CeRPA | Paper_evidence | WBPaper00025014 | ||||
WBPaper00031956 | |||||||
CeRPA32 | Paper_evidence | WBPaper00040684 | |||||
CELE_M04F3.1 | Accession_evidence | NDB | BX284601 | ||||
Public_name | rpa-2 | ||||||
DB_info | Database | AceView | gene | 1F339 | |||
WormQTL | gene | WBGene00019767 | |||||
WormFlux | gene | WBGene00019767 | |||||
NDB | locus_tag | CELE_M04F3.1 | |||||
Panther | gene | CAEEL|WormBase=WBGene00019767|UniProtKB=Q95Y97 | |||||
family | PTHR13989 | ||||||
NCBI | gene | 172092 | |||||
RefSeq | protein | NM_059045.8 | |||||
TREEFAM | TREEFAM_ID | TF352968 | |||||
TrEMBL | UniProtAcc | Q95Y97 | |||||
UniProt_GCRP | UniProtAcc | Q95Y97 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | rpa | ||||||
Allele (14) | |||||||
Strain (7) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (23) | |||||||
Ortholog (22) | |||||||
Paralog | WBGene00019079 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
Structured_description | Concise_description | rpa-2 encodes the C. elegans homolog of the medium subunit of replication protein A (RPA); by homology RPA-2 is predicted to function in several DNA metabolic processes, including recombination, repair, and replication, as well as cell cycle and DNA damage checkpoints; RPA-2 physically interacts with RPA-1, the RPA large subunit, in vivo. | Paper_evidence | WBPaper00025138 | |||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 05 Aug 2012 00:00:00 | ||||||
Automated_description | Enables enzyme binding activity. Predicted to be involved in DNA replication; double-strand break repair via homologous recombination; and nucleotide-excision repair. Predicted to be located in chromosome, telomeric region and site of double-strand break. Predicted to be part of DNA replication factor A complex. Expressed in pharyngeal neurons and seam cell. Is an ortholog of human RPA2 (replication protein A2). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | M04F3.1 | |||||
Corresponding_transcript | M04F3.1.1 | ||||||
Other_sequence | CGC00518_1 | ||||||
CRC01239_1 | |||||||
CR09300 | |||||||
CR09179 | |||||||
CBC03124_1 | |||||||
CJC02916_1 | |||||||
CR02657 | |||||||
Associated_feature | WBsf643240 | ||||||
WBsf643241 | |||||||
WBsf654782 | |||||||
WBsf656251 | |||||||
WBsf981006 | |||||||
WBsf983484 | |||||||
WBsf983485 | |||||||
WBsf217575 | |||||||
Experimental_info | RNAi_result (18) | ||||||
Expr_pattern | Chronogram2029 | ||||||
Expr7623 | |||||||
Expr1026249 | |||||||
Expr1038551 | |||||||
Expr1154609 | |||||||
Expr1200320 | |||||||
Expr2015415 | |||||||
Expr2033650 | |||||||
Drives_construct | WBCnstr00001067 | ||||||
WBCnstr00012768 | |||||||
WBCnstr00025609 | |||||||
Construct_product | WBCnstr00025609 | ||||||
Microarray_results (21) | |||||||
Expression_cluster (154) | |||||||
Interaction (266) | |||||||
Map_info | Map | I | Position | -0.738345 | Error | 0.002057 | |
Positive | Positive_clone | M04F3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference (14) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |