WormBase Tree Display for Gene: WBGene00019462
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| WBGene00019462 | SMap | S_parent | Sequence | K07A9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | ccm-2 | Person_evidence | WBPerson137 | |||||
| Sequence_name | K07A9.3 | ||||||||
| Molecular_name | K07A9.3 | ||||||||
| K07A9.3.1 | |||||||||
| CE48763 | |||||||||
| Other_name | CELE_K07A9.3 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | ccm-2 | ||||||||
| DB_info | Database | AceView | gene | 4C599 | |||||
| WormQTL | gene | WBGene00019462 | |||||||
| WormFlux | gene | WBGene00019462 | |||||||
| NDB | locus_tag | CELE_K07A9.3 | |||||||
| NCBI | gene | 187085 | |||||||
| RefSeq | protein | NM_001392259.1 | |||||||
| TrEMBL | UniProtAcc | Q9TXI9 | |||||||
| UniProt_GCRP | UniProtAcc | Q9TXI9 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 04 Sep 2013 14:28:38 | WBPerson4025 | Event | Acquires_merge | WBGene00019463 | ||||
| 3 | 09 Oct 2018 11:56:16 | WBPerson1983 | Name_change | CGC_name | ccm-2 | ||||
| Acquires_merge | WBGene00019463 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ccm | ||||||||
| Allele (362) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (19) | |||||||||
| Structured_description | Automated_description | Enriched in several structures, including ABarppaapp; ABarpppapp; ABplpppaaa; AVK; and head mesodermal cell based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-2; age-1; and sir-2.1 based on microarray; RNA-seq; and proteomic studies. Is affected by eight chemicals including tryptophan; rotenone; and stavudine based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domain: PH-like domain superfamily. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | K07A9.3 | |||||||
| Corresponding_CDS_history | K07A9.3:wp202 | ||||||||
| K07A9.3:wp239 | |||||||||
| Corresponding_transcript | K07A9.3.1 | ||||||||
| Other_sequence | BXC06277_1 | ||||||||
| PT04523 | |||||||||
| CJC09190_1 | |||||||||
| JI478784.1 | |||||||||
| Associated_feature (14) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00050107 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00016691 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1020069 | ||||||||
| Expr1027604 | |||||||||
| Expr1038406 | |||||||||
| Expr1038407 | |||||||||
| Expr1153809 | |||||||||
| Expr1153810 | |||||||||
| Expr2004841 | |||||||||
| Expr2023062 | |||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (84) | |||||||||
| Interaction | WBInteraction000125634 | ||||||||
| WBInteraction000360409 | |||||||||
| WBInteraction000369754 | |||||||||
| WBInteraction000560397 | |||||||||
| Map_info | Map | IV | Position | -15.2468 | |||||
| Positive | Positive_clone | K07A9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00056586 | ||||||||
| WBPaper00057964 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
