WormBase Tree Display for Gene: WBGene00019218
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| WBGene00019218 | SMap | S_parent | Sequence | H20J04 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | madf-3 | Person_evidence | WBPerson260 | |||||
| WBPerson1997 | |||||||||
| Sequence_name | H20J04.3 | ||||||||
| Molecular_name | H20J04.3 | ||||||||
| H20J04.3.1 | |||||||||
| CE23813 | |||||||||
| Other_name | CELE_H20J04.3 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | madf-3 | ||||||||
| DB_info | Database | AceView | gene | 2E627 | |||||
| WormQTL | gene | WBGene00019218 | |||||||
| WormFlux | gene | WBGene00019218 | |||||||
| NDB | locus_tag | CELE_H20J04.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00019218|UniProtKB=Q9N5M0 | |||||||
| family | PTHR12243 | ||||||||
| NCBI | gene | 186755 | |||||||
| RefSeq | protein | NM_062365.2 | |||||||
| TREEFAM | TREEFAM_ID | TF343847 | |||||||
| TrEMBL | UniProtAcc | Q9N5M0 | |||||||
| UniProt_GCRP | UniProtAcc | Q9N5M0 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 17 May 2011 14:01:04 | WBPerson2970 | Name_change | CGC_name | madf-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | madf | ||||||||
| Allele (111) | |||||||||
| Strain | WBStrain00047517 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00095513 | ||||||||
| 00095514 | |||||||||
| 00095515 | |||||||||
| 00095516 | |||||||||
| 00095517 | |||||||||
| 00095518 | |||||||||
| Contained_in_operon | CEOP2124 | ||||||||
| CEOP2710 | |||||||||
| Ortholog (28) | |||||||||
| Paralog | WBGene00007242 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00008118 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00009461 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00011575 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00013717 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00022608 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of transcription regulator complex. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | H20J04.3 | |||||||
| Corresponding_transcript | H20J04.3.1 | ||||||||
| Other_sequence (41) | |||||||||
| Transcription_factor | WBTranscriptionFactor001029 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00086986 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00087211 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00086983 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00049444 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00086984 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00033731 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00086987 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00087174 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00086985 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1011019 | ||||||||
| Expr1038299 | |||||||||
| Expr1153170 | |||||||||
| Expr2013340 | |||||||||
| Expr2031572 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (48) | |||||||||
| Interaction | WBInteraction000501114 | ||||||||
| WBInteraction000501115 | |||||||||
| WBInteraction000517616 | |||||||||
| WBInteraction000517617 | |||||||||
| WBInteraction000517719 | |||||||||
| WBInteraction000541530 | |||||||||
| WBInteraction000556445 | |||||||||
| Map_info | Map | II | Position | -4.83243 | Error | 0.007465 | |||
| Positive | Positive_clone | H20J04 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031224 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
