WormBase Tree Display for Gene: WBGene00019001
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| WBGene00019001 | SMap | S_parent | Sequence | F57B10 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | ipgm-1 | Paper_evidence | WBPaper00024424 | |||||
| Sequence_name | F57B10.3 | ||||||||
| Molecular_name | F57B10.3a | ||||||||
| F57B10.3a.1 | |||||||||
| CE11302 | |||||||||
| F57B10.3b | |||||||||
| CE33113 | |||||||||
| F57B10.3b.1 | |||||||||
| Other_name | CELE_F57B10.3 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | ipgm-1 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ipgm | ||||||||
| Allele (33) | |||||||||
| Strain | WBStrain00022161 | ||||||||
| In_cluster | conserved_miRNA_siRNA_cluster | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Contained_in_operon | CEOP1991 | ||||||||
| Ortholog (33) | |||||||||
| Structured_description | Concise_description | ipgm-1 encodes an experimentally confirmed cofactor-independent phosphoglycerate mutase that is essential for embryonic and larval viability, and for normal body morphology; paradoxically, ipgm-1 is also required for normally short lifespan (in mass RNAi screens for Age phenotypes); IPGM-1 exhibits phosphoglycerate mutase activity when expressed in vitro; ipgm-1 is expressed widely in larvae and adults, with highest expression in the nerve ring, intestine and body wall muscles; IPGM-1 probably functions in glycolytic and gluconeogenic metabolism. | Paper_evidence | WBPaper00005659 | |||||
| WBPaper00024424 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 21 Nov 2014 00:00:00 | ||||||||
| Automated_description | Enables 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity. Involved in carbohydrate metabolic process. Predicted to be located in cytoplasm. Expressed in body wall musculature; intestine; and nerve ring. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F57B10.3a | |||||||
| F57B10.3b | |||||||||
| Corresponding_transcript | F57B10.3a.1 | ||||||||
| F57B10.3b.1 | |||||||||
| Other_sequence (110) | |||||||||
| Associated_feature | WBsf643384 | ||||||||
| WBsf643385 | |||||||||
| WBsf656418 | |||||||||
| WBsf981030 | |||||||||
| WBsf983955 | |||||||||
| WBsf217857 | |||||||||
| WBsf217858 | |||||||||
| Experimental_info | RNAi_result (11) | ||||||||
| Expr_pattern | Expr3022 | ||||||||
| Expr1022761 | |||||||||
| Expr1038202 | |||||||||
| Expr1152575 | |||||||||
| Expr2012805 | |||||||||
| Expr2031044 | |||||||||
| Drives_construct | WBCnstr00001237 | ||||||||
| WBCnstr00026135 | |||||||||
| Construct_product | WBCnstr00026135 | ||||||||
| Microarray_results (29) | |||||||||
| Expression_cluster (162) | |||||||||
| Interaction (58) | |||||||||
| Map_info | Map | I | Position | 1.21446 | |||||
| Positive | Positive_clone | F57B10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00024424 | ||||||||
| WBPaper00027145 | |||||||||
| WBPaper00029197 | |||||||||
| WBPaper00031037 | |||||||||
| WBPaper00033090 | |||||||||
| WBPaper00056358 | |||||||||
| WBPaper00065394 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
