WormBase Tree Display for Gene: WBGene00018993
expand all nodes | collapse all nodes | view schema
| WBGene00018993 | SMap | S_parent | Sequence | F56H1 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | ||||||||
| Name | CGC_name | nhr-266 | Person_evidence | WBPerson600 | ||||||
| Sequence_name | F56H1.2 | |||||||||
| Molecular_name | F56H1.2 | |||||||||
| Other_name | CELE_F56H1.2 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | nhr-266 | |||||||||
| DB_info | Database | AceView | gene | 1G317 | ||||||
| WormQTL | gene | WBGene00018993 | ||||||||
| WormFlux | gene | WBGene00018993 | ||||||||
| NDB | locus_tag | CELE_F56H1.2 | ||||||||
| NCBI | gene | 186410 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | |||
| 2 | 22 Jul 2005 10:29:12 | WBPerson2970 | Name_change | CGC_name | nhr-266 | |||||
| 3 | 18 Feb 2016 15:26:36 | WBPerson1983 | Event | Changed_class | CDS | Pseudogene | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Gene_class | nhr | |||||||||
| Allele (61) | ||||||||||
| RNASeq_FPKM (74) | ||||||||||
| Ortholog | WBGene00033749 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
| WBGene00148251 | Caenorhabditis brenneri | From_analysis | OMA | |||||||
| WBGene00162074 | Caenorhabditis brenneri | From_analysis | OMA | |||||||
| WBGene00158168 | Caenorhabditis brenneri | From_analysis | TreeFam | |||||||
| WBGene00155641 | Caenorhabditis brenneri | From_analysis | TreeFam | |||||||
| WBGene00079359 | Caenorhabditis remanei | From_analysis | TreeFam | |||||||
| Paralog | WBGene00000265 | |||||||||
| WBGene00018235 | Caenorhabditis elegans | From_analysis | TreeFam | |||||||
| Structured_description | Automated_description | Enriched in male based on RNA-seq studies. Is affected by several genes including daf-2; eat-2; and pgl-1 based on microarray; tiling array; and RNA-seq studies. Is affected by cholesterol; Doxycycline; and paraquat based on RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | F56H1.2:wp221 | ||||||||
| F56H1.2:wp252 | ||||||||||
| Corresponding_pseudogene | F56H1.2 | |||||||||
| Associated_feature | WBsf978394 | |||||||||
| WBsf217701 | ||||||||||
| WBsf217702 | ||||||||||
| Transcription_factor | WBTranscriptionFactor000896 | |||||||||
| Experimental_info | Expr_pattern | Expr1025457 | ||||||||
| Expr1152516 | ||||||||||
| Microarray_results | SMD_F56H1.2 | |||||||||
| SMD_F56H1.3:2 | ||||||||||
| 189857_at | ||||||||||
| Aff_F56H1.2 | ||||||||||
| GPL8673_F56H1_2P01551 | ||||||||||
| Expression_cluster (54) | ||||||||||
| Interaction (11) | ||||||||||
| Map_info | Map | I | Position | 0.4247 | Error | 0.004689 | ||||
| Positive | Positive_clone | F56H1 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Mapping_data | Multi_point | 5422 | ||||||||
| Pseudo_map_position | ||||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
