WormBase Tree Display for Gene: WBGene00018943
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WBGene00018943 | SMap | S_parent | Sequence | F56C3 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | dgn-2 | Person_evidence | WBPerson345 | |||
Sequence_name | F56C3.6 | ||||||
Molecular_name | F56C3.6 | ||||||
F56C3.6.1 | |||||||
CE17897 | |||||||
Other_name | CELE_F56C3.6 | Accession_evidence | NDB | BX284606 | |||
Public_name | dgn-2 | ||||||
DB_info | Database (11) | ||||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | dgn | ||||||
Allele (47) | |||||||
Strain | WBStrain00005033 | ||||||
WBStrain00005039 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00036244 | ||||||
00036245 | |||||||
00036246 | |||||||
00036247 | |||||||
00036248 | |||||||
00036249 | |||||||
00036250 | |||||||
00123910 | |||||||
Ortholog (16) | |||||||
Paralog | WBGene00017221 | Caenorhabditis elegans | From_analysis | TreeFam | |||
WBGene00000961 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Structured_description | Automated_description | Predicted to enable laminin binding activity. Predicted to be involved in axon guidance; morphogenesis of an epithelium; and nerve development. Predicted to be located in sarcolemma. Predicted to be part of dystroglycan complex. Human ortholog(s) of this gene implicated in Duchenne muscular dystrophy; Fukuyama congenital muscular dystrophy; autosomal recessive limb-girdle muscular dystrophy type 2D; autosomal recessive limb-girdle muscular dystrophy type 2P; bronchopulmonary dysplasia; congenital muscular dystrophy-dystroglycanopathy type A9; and inclusion body myositis. Is an ortholog of human DAG1 (dystroglycan 1). | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Disease_info | Potential_model | DOID:0110278 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2666) | ||
DOID:0050559 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2666) | ||||
DOID:11723 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2666) | ||||
DOID:3429 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2666) | ||||
DOID:0110293 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2666) | ||||
DOID:11650 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2666) | ||||
DOID:0111232 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2666) | ||||
Molecular_info | Corresponding_CDS | F56C3.6 | |||||
Corresponding_transcript | F56C3.6.1 | ||||||
Associated_feature | WBsf670110 | ||||||
WBsf1004022 | |||||||
WBsf1004023 | |||||||
WBsf1022260 | |||||||
WBsf1022261 | |||||||
Experimental_info | RNAi_result | WBRNAi00048661 | Inferred_automatically | RNAi_primary | |||
WBRNAi00032940 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00093028 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1026871 | ||||||
Expr1152423 | |||||||
Expr2029107 | |||||||
Drives_construct | WBCnstr00026176 | ||||||
Construct_product | WBCnstr00026176 | ||||||
Microarray_results (17) | |||||||
Expression_cluster (63) | |||||||
Interaction | WBInteraction000203122 | ||||||
WBInteraction000217819 | |||||||
WBInteraction000306215 | |||||||
WBInteraction000377236 | |||||||
WBInteraction000396771 | |||||||
Map_info | Map | X | Position | -18.2125 | Error | 0.051862 | |
Positive | Positive_clone | F56C3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Multi_point | 5069 | |||||
4744 | |||||||
Pseudo_map_position | |||||||
Reference | WBPaper00027231 | ||||||
WBPaper00027321 | |||||||
WBPaper00032446 | |||||||
WBPaper00040382 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |