WormBase Tree Display for Gene: WBGene00018869
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| WBGene00018869 | SMap | S_parent | Sequence | F55C12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | rfip-1 | Person_evidence | WBPerson24243 | |||||
| WBPerson95 | |||||||||
| Sequence_name | F55C12.1 | ||||||||
| Molecular_name (15) | |||||||||
| Other_name | CELE_F55C12.1 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | rfip-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 05 Nov 2014 11:16:03 | WBPerson2970 | Name_change | CGC_name | rfip-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rfip | ||||||||
| Allele (111) | |||||||||
| Strain | WBStrain00036343 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Ortholog (39) | |||||||||
| Structured_description | Concise_description | rfip-1 encodes the C. elegans ortholog of the RAB-11 effector NUF (nuclear fallout in Drosophila), also known in humans as RAB11FIP3 and RAB11FIP4; loss of rfip-1 activity results in scattering of recycling endosomes and late endosomes, indicating a role for RFIP-1 in recycling endosome positioning and apicobasal cell polarity. | Paper_evidence | WBPaper00041129 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 05 Nov 2014 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in endocytic recycling and regulation of cytokinesis. Predicted to be located in cleavage furrow; cytoplasmic vesicle; and midbody. Expressed in several structures, including excretory canal; head neurons; intestine; pharynx; and tail neurons. Is an ortholog of human RAB11FIP3 (RAB11 family interacting protein 3) and RAB11FIP4 (RAB11 family interacting protein 4). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F55C12.1a | |||||||
| F55C12.1b | |||||||||
| F55C12.1c | |||||||||
| F55C12.1d | |||||||||
| Corresponding_transcript | F55C12.1e | ||||||||
| F55C12.1a.1 | |||||||||
| F55C12.1a.2 | |||||||||
| F55C12.1a.3 | |||||||||
| F55C12.1b.1 | |||||||||
| F55C12.1c.1 | |||||||||
| F55C12.1d.1 | |||||||||
| Other_sequence (18) | |||||||||
| Associated_feature (38) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00091242 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00015702 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00091243 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048460 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00032858 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00090862 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr12545 | ||||||||
| Expr12546 | |||||||||
| Expr12547 | |||||||||
| Expr1014539 | |||||||||
| Expr1038143 | |||||||||
| Expr1152252 | |||||||||
| Expr2015307 | |||||||||
| Expr2033541 | |||||||||
| Drives_construct | WBCnstr00021409 | ||||||||
| WBCnstr00021410 | |||||||||
| WBCnstr00021488 | |||||||||
| WBCnstr00021489 | |||||||||
| WBCnstr00026228 | |||||||||
| Construct_product | WBCnstr00021199 | ||||||||
| WBCnstr00026228 | |||||||||
| Microarray_results (34) | |||||||||
| Expression_cluster (170) | |||||||||
| Interaction (17) | |||||||||
| Map_info | Map | II | Position | -0.857526 | |||||
| Positive | Positive_clone | F55C12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00047964 | |||||||||
| WBPaper00048760 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
