WormBase Tree Display for Gene: WBGene00018716
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| WBGene00018716 | SMap | S_parent | Sequence | F52H2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | smvt-1 | Author_evidence | WBPerson590 | |||||
| Sequence_name | F52H2.4 | ||||||||
| Molecular_name | F52H2.4 | ||||||||
| F52H2.4.1 | |||||||||
| CE54590 | |||||||||
| Other_name | CELE_F52H2.4 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | smvt-1 | ||||||||
| DB_info | Database | AceView | gene | XD160 | |||||
| WormQTL | gene | WBGene00018716 | |||||||
| WormFlux | gene | WBGene00018716 | |||||||
| NDB | locus_tag | CELE_F52H2.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00018716|UniProtKB=O17394 | |||||||
| family | PTHR42985 | ||||||||
| NCBI | gene | 186132 | |||||||
| RefSeq | protein | NM_001373247.3 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 10 Jul 2023 23:47:10 | WBPerson51134 | Name_change | CGC_name | smvt-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | smvt | ||||||||
| Allele (81) | |||||||||
| Strain | WBStrain00032159 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00029720 | ||||||||
| 00029721 | |||||||||
| 00029722 | |||||||||
| 00029723 | |||||||||
| 00029724 | |||||||||
| 00029725 | |||||||||
| 00123759 | |||||||||
| 00123760 | |||||||||
| 00123761 | |||||||||
| Ortholog (30) | |||||||||
| Paralog | WBGene00014092 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00000501 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable symporter activity. Predicted to be involved in sodium ion transport. Predicted to be located in membrane. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F52H2.4 | |||||||
| Corresponding_CDS_history | F52H2.4:wp88 | ||||||||
| F52H2.4:wp222 | |||||||||
| F52H2.4:wp271 | |||||||||
| F52H2.4:wp288 | |||||||||
| Corresponding_transcript | F52H2.4.1 | ||||||||
| Other_sequence | JI170411.1 | ||||||||
| BMC02557_1 | |||||||||
| JI228279.1 | |||||||||
| JO469433.1 | |||||||||
| Associated_feature | WBsf670204 | ||||||||
| WBsf717309 | |||||||||
| WBsf1004367 | |||||||||
| WBsf1004368 | |||||||||
| WBsf1022481 | |||||||||
| WBsf237093 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00048024 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr1010243 | ||||||||
| Expr1151842 | |||||||||
| Expr2004011 | |||||||||
| Expr2022233 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (121) | |||||||||
| Interaction (16) | |||||||||
| Map_info | Map | X | Position | -14.4416 | |||||
| Positive | Positive_clone | F52H2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
