WormBase Tree Display for Gene: WBGene00000501
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| WBGene00000501 | SMap | S_parent | Sequence | C48D1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | cho-1 | Person_evidence | WBPerson508 | |||||
| Sequence_name | C48D1.3 | ||||||||
| Molecular_name | C48D1.3 | ||||||||
| C48D1.3.1 | |||||||||
| CE27109 | |||||||||
| Other_name | CELE_C48D1.3 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | cho-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cho | ||||||||
| Allele (91) | |||||||||
| Strain | WBStrain00004034 | ||||||||
| WBStrain00004035 | |||||||||
| WBStrain00033386 | |||||||||
| WBStrain00033389 | |||||||||
| WBStrain00036129 | |||||||||
| WBStrain00033405 | |||||||||
| WBStrain00033393 | |||||||||
| WBStrain00033404 | |||||||||
| WBStrain00033403 | |||||||||
| WBStrain00033406 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (24) | |||||||||
| Ortholog (41) | |||||||||
| Paralog | WBGene00014092 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00018716 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | cho-1 encodes a high-affinity choline transporter orthologous to members of the sodium-dependent glucose transporter family; CHO-1 is expressed in cholinergic neurons. | Paper_evidence | WBPaper00003947 | |||||
| WBPaper00019363 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enables choline transmembrane transporter activity. Involved in choline transport. Located in axon; neuronal cell body; and synaptic vesicle. Expressed in head mesodermal cell; intestine; nerve ring; and neurons. Human ortholog(s) of this gene implicated in congenital myasthenic syndrome 20; distal hereditary motor neuronopathy type 7A; and major depressive disorder. Is an ortholog of human SLC5A7 (solute carrier family 5 member 7). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0111201 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:14025) | ||||
| DOID:1470 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:14025) | ||||||
| DOID:1596 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:14025) | ||||||
| DOID:0110661 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:14025) | ||||||
| Molecular_info | Corresponding_CDS | C48D1.3 | |||||||
| Corresponding_CDS_history | C48D1.3:wp47 | ||||||||
| Corresponding_transcript | C48D1.3.1 | ||||||||
| Other_sequence (24) | |||||||||
| Associated_feature | WBsf945409 | Paper_evidence | WBPaper00044605 | ||||||
| WBsf998358 | |||||||||
| WBsf998359 | |||||||||
| WBsf998360 | |||||||||
| WBsf998361 | |||||||||
| WBsf1018504 | |||||||||
| WBsf1018505 | |||||||||
| WBsf231100 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00007265 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00029943 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00042733 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00075846 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00012101 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (14) | |||||||||
| Drives_construct (22) | |||||||||
| Construct_product (11) | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (176) | |||||||||
| Interaction (22) | |||||||||
| Map_info | Map | IV | Position | 8.47547 | Error | 0.003353 | |||
| Positive | Positive_clone | C48D1 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4218 | |||||||
| Pseudo_map_position | |||||||||
| Reference (22) | |||||||||
| Remark | Sequence connection from [Okuda T, Katsura I] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
