WormBase Tree Display for Gene: WBGene00018353
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WBGene00018353 | SMap | S_parent | Sequence | F42G2 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name (5) | |||||||
DB_info | Database | WormQTL | gene | WBGene00018353 | |||
WormFlux | gene | WBGene00018353 | |||||
NDB | locus_tag | CELE_F42G2.4 | |||||
NCBI | gene | 173594 | |||||
RefSeq | protein | NM_001377723.1 | |||||
TREEFAM | TREEFAM_ID | TF322500 | |||||
TrEMBL | UniProtAcc | Q6HAE7 | |||||
UniProt_GCRP | UniProtAcc | Q6HAE7 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | fbxa | ||||||
Allele (159) | |||||||
Strain | WBStrain00047576 | ||||||
RNASeq_FPKM (74) | |||||||
Ortholog (29) | |||||||
Paralog (219) | |||||||
Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. | Paper_evidence | WBPaper00012854 | |||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Enriched in RICL; RICR; and intestine based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and glp-1 based on microarray; tiling array; and RNA-seq studies. Is affected by twenty chemicals including 1-methylnicotinamide; methylmercuric chloride; and D-glucopyranose based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; FTH domain; and F-box A protein FB224. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F42G2.4 | |||||
Corresponding_CDS_history | F42G2.4:wp274 | ||||||
F42G2.4a:wp125 | |||||||
F42G2.4a:wp151 | |||||||
F42G2.4b:wp125 | |||||||
F42G2.4b:wp151 | |||||||
Corresponding_transcript | F42G2.4.1 | ||||||
Associated_feature | WBsf665396 | ||||||
WBsf222764 | |||||||
Experimental_info | RNAi_result | WBRNAi00014834 | Inferred_automatically | RNAi_primary | |||
WBRNAi00047113 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1021429 | ||||||
Expr1150980 | |||||||
Expr2011502 | |||||||
Expr2029739 | |||||||
Drives_construct | WBCnstr00026587 | ||||||
Construct_product | WBCnstr00026587 | ||||||
Microarray_results (15) | |||||||
Expression_cluster (230) | |||||||
Interaction (27) | |||||||
Map_info | Map | II | Position | -13.8292 | Error | 0.00069 | |
Positive | Positive_clone | F42G2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00012854 | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |