WormBase Tree Display for Gene: WBGene00018162
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WBGene00018162 | SMap | S_parent | Sequence | F38A5 | ||
---|---|---|---|---|---|---|
Identity (6) | ||||||
Gene_info | Biotype | SO:0001217 | ||||
Gene_class | nspb | |||||
Allele | WBVar01499395 | |||||
WBVar01499396 | ||||||
WBVar00427254 | ||||||
WBVar02120505 | ||||||
WBVar01499633 | ||||||
WBVar00916924 | ||||||
WBVar01500245 | ||||||
RNASeq_FPKM (74) | ||||||
Ortholog (14) | ||||||
Paralog | WBGene00018170 | Caenorhabditis elegans | From_analysis | TreeFam | ||
Inparanoid_8 | ||||||
Panther | ||||||
WormBase-Compara | ||||||
WBGene00018169 | Caenorhabditis elegans | From_analysis | TreeFam | |||
Inparanoid_8 | ||||||
Panther | ||||||
WormBase-Compara | ||||||
WBGene00018167 | Caenorhabditis elegans | From_analysis | TreeFam | |||
Inparanoid_8 | ||||||
Panther | ||||||
WBGene00018166 | Caenorhabditis elegans | From_analysis | TreeFam | |||
Inparanoid_8 | ||||||
Panther | ||||||
WormBase-Compara | ||||||
WBGene00019152 | Caenorhabditis elegans | From_analysis | TreeFam | |||
Inparanoid_8 | ||||||
Panther | ||||||
Structured_description | Automated_description | Enriched in GABAergic neurons based on RNA-seq studies. Is affected by several genes including daf-2; rrf-3; and eat-2 based on quantitative PCR; microarray; and RNA-seq studies. Is affected by eighteen chemicals including aldicarb; D-glucose; and Cry5B based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: Protein of unknown function (DUF1459) and Protein of unknown function DUF1459. | Paper_evidence | WBPaper00065943 | ||
Curator_confirmed (2) | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Molecular_info | Corresponding_CDS | F38A5.5 | ||||
Corresponding_transcript | F38A5.5.1 | |||||
Other_sequence | CSC00831_1 | |||||
CBC15537_1 | ||||||
FD517213.1 | ||||||
Associated_feature | WBsf230178 | |||||
Experimental_info | RNAi_result (8) | |||||
Expr_pattern | Expr1150549 | |||||
Expr2014457 | ||||||
Drives_construct | WBCnstr00026735 | |||||
Construct_product | WBCnstr00026735 | |||||
Microarray_results | SMD_F38A5.5 | |||||
172417_x_at | ||||||
172595_x_at | ||||||
185454_s_at | ||||||
A_12_P110586 | ||||||
GPL19516_CGZ0020360 | ||||||
GPL21109_F38A5.5 | ||||||
GPL3518_CE10034 | ||||||
GPL8304_CE_WBGene00018162_A | ||||||
GPL8673_F38A5_5P00158 | ||||||
Expression_cluster (113) | ||||||
Interaction (25) | ||||||
Map_info | Map | IV | Position | 3.21259 | ||
Positive | Positive_clone | F38A5 | Inferred_automatically | From sequence, transcript, pseudogene data | ||
Pseudo_map_position | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||
Method | Gene |