WormBase Tree Display for Gene: WBGene00018023
expand all nodes | collapse all nodes | view schema
| WBGene00018023 | SMap | S_parent | Sequence | F34D6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | set-11 | Person_evidence | WBPerson1730 | |||||
| WBPerson268 | |||||||||
| WBPerson632 | |||||||||
| Sequence_name | F34D6.4 | ||||||||
| Molecular_name | F34D6.4 | ||||||||
| F34D6.4.1 | |||||||||
| CE53846 | |||||||||
| Other_name | CELE_F34D6.4 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | set-11 | ||||||||
| DB_info | Database | AceView | gene | 2C980 | |||||
| WormQTL | gene | WBGene00018023 | |||||||
| WormFlux | gene | WBGene00018023 | |||||||
| NDB | locus_tag | CELE_F34D6.4 | |||||||
| NCBI | gene | 185242 | |||||||
| RefSeq | protein | NM_001377732.1 | |||||||
| TrEMBL | UniProtAcc | O17186 | |||||||
| UniProt_GCRP | UniProtAcc | O17186 | |||||||
| OMIM | gene | 607001 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:59 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 03 May 2007 10:33:07 | WBPerson2970 | Name_change | CGC_name | set-11 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | set | ||||||||
| Allele (73) | |||||||||
| Strain | WBStrain00027464 | ||||||||
| WBStrain00036425 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00029428 | ||||||||
| 00029429 | |||||||||
| 00029430 | |||||||||
| 00029431 | |||||||||
| 00029432 | |||||||||
| 00029433 | |||||||||
| 00123286 | |||||||||
| 00123287 | |||||||||
| 00123288 | |||||||||
| Ortholog (43) | |||||||||
| Paralog (19) | |||||||||
| Structured_description | Concise_description | set-11 encodes a putative histone H3 lysine-9 methyltransferase orthologous to human EHMT1 (OMIM:607001, mutated in 9q subtelomeric deletion syndrome) and EHMT2 (OMIM:604599). | Paper_evidence | WBPaper00030864 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 11 Feb 2014 00:00:00 | ||||||||
| Automated_description | Predicted to enable p53 binding activity; protein methyltransferase activity; and zinc ion binding activity. Involved in innate immune response. Predicted to be located in chromosome and nucleus. Human ortholog(s) of this gene implicated in several diseases, including Kleefstra syndrome 1; esophagus squamous cell carcinoma; and lung disease (multiple). Is an ortholog of human EHMT1 (euchromatic histone lysine methyltransferase 1) and EHMT2 (euchromatic histone lysine methyltransferase 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0060352 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:24650) | ||||
| DOID:0050156 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:14129) | ||||||
| DOID:3748 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:14129,HGNC:24650) | ||||||
| DOID:986 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:14129) | ||||||
| DOID:3910 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:14129) | ||||||
| DOID:0080597 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:24650) | ||||||
| DOID:1909 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:14129) | ||||||
| Molecular_info | Corresponding_CDS | F34D6.4 | |||||||
| Corresponding_CDS_history | F34D6.4:wp84 | ||||||||
| F34D6.4:wp125 | |||||||||
| F34D6.4:wp274 | |||||||||
| Corresponding_transcript | F34D6.4.1 | ||||||||
| Other_sequence | AYC02355_1 | ||||||||
| AE03580 | |||||||||
| MI07809 | |||||||||
| Associated_feature | WBsf987017 | ||||||||
| WBsf987018 | |||||||||
| WBsf987019 | |||||||||
| WBsf1011752 | |||||||||
| WBsf1011753 | |||||||||
| WBsf222786 | |||||||||
| WBsf222787 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00014272 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00091480 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00046257 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00113448 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr14382 | ||||||||
| Expr1016433 | |||||||||
| Expr1150143 | |||||||||
| Expr2015755 | |||||||||
| Expr2033988 | |||||||||
| Drives_construct | WBCnstr00026832 | ||||||||
| Construct_product | WBCnstr00026832 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (102) | |||||||||
| Interaction (23) | |||||||||
| Map_info | Map | II | Position | -12.0824 | Error | 0.025958 | |||
| Positive | Positive_clone | F34D6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00030864 | ||||||||
| WBPaper00032309 | |||||||||
| WBPaper00036383 | |||||||||
| WBPaper00038372 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00047844 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065308 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
