WormBase Tree Display for Gene: WBGene00017723
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| WBGene00017723 | SMap | S_parent | Sequence | F22F7 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | bgnt-1.2 | Person_evidence | WBPerson2136 | |||||
| WBPerson5364 | |||||||||
| Sequence_name | F22F7.6 | ||||||||
| Molecular_name | F22F7.6 | ||||||||
| F22F7.6.1 | |||||||||
| CE50993 | |||||||||
| Other_name | CELE_F22F7.6 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | bgnt-1.2 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:59 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 09 Oct 2015 09:56:12 | WBPerson2970 | Name_change | CGC_name | bgnt-1.2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | bgnt | ||||||||
| Allele (65) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (26) | |||||||||
| Paralog | WBGene00008290 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00008491 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00009032 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00010167 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00010694 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00010716 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WormBase-Compara | |||||||||
| WBGene00011779 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00015982 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Enriched in hypodermis and seam cell based on tiling array and single-cell RNA-seq studies. Is affected by several genes including rrf-3; eat-2; and clk-1 based on tiling array; RNA-seq; and microarray studies. Is affected by fourteen chemicals including methylmercuric chloride; Tunicamycin; and stavudine based on microarray and RNA-seq studies. Human ortholog(s) of this gene implicated in congenital muscular dystrophy-dystroglycanopathy type A13. Human B4GAT1 enables glucuronosyltransferase activity. Is predicted to encode a protein with the following domain: Glycosyl-transferase for dystroglycan. Is an ortholog of human B4GAT1 (beta-1,4-glucuronyltransferase 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0111238 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:15685) | ||||
| Molecular_info | Corresponding_CDS | F22F7.6 | |||||||
| Corresponding_CDS_history | F22F7.6:wp106 | ||||||||
| F22F7.6:wp249 | |||||||||
| F22F7.6b:wp246 | |||||||||
| Corresponding_transcript | F22F7.6.1 | ||||||||
| Other_sequence | FG647764.1 | ||||||||
| FG647736.1 | |||||||||
| Associated_feature | WBsf233392 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00045358 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00013783 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00045354 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00031295 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr7770 | ||||||||
| Expr1027739 | |||||||||
| Expr1037606 | |||||||||
| Expr1149282 | |||||||||
| Expr2009620 | |||||||||
| Expr2027858 | |||||||||
| Drives_construct | WBCnstr00012915 | ||||||||
| WBCnstr00027071 | |||||||||
| Construct_product | WBCnstr00027071 | ||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (90) | |||||||||
| Interaction | WBInteraction000032115 | ||||||||
| WBInteraction000330952 | |||||||||
| WBInteraction000370793 | |||||||||
| WBInteraction000384672 | |||||||||
| WBInteraction000506579 | |||||||||
| WBInteraction000506580 | |||||||||
| WBInteraction000506581 | |||||||||
| Map_info | Map | V | Position | -15.8134 | |||||
| Positive | Positive_clone | F22F7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065080 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
