WormBase Tree Display for Gene: WBGene00010167
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| WBGene00010167 | SMap | S_parent | Sequence | F56H6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | bgnt-1.6 | Person_evidence | WBPerson2136 | |||||
| WBPerson5364 | |||||||||
| Sequence_name | F56H6.6 | ||||||||
| Molecular_name | F56H6.6 | ||||||||
| F56H6.6.1 | |||||||||
| CE16134 | |||||||||
| Other_name | CELE_F56H6.6 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | bgnt-1.6 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 09 Oct 2015 09:56:12 | WBPerson2970 | Name_change | CGC_name | bgnt-1.6 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | bgnt | ||||||||
| Allele (61) | |||||||||
| Strain | WBStrain00037592 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (33) | |||||||||
| Paralog | WBGene00008290 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00008491 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00009032 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00015982 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00010694 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00017723 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00011779 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00010716 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Enriched in germ line and in male based on RNA-seq studies. Is affected by several genes including pmk-1; npr-1; and pgl-1 based on tiling array; microarray; and RNA-seq studies. Is affected by ten chemicals including tryptophan; Tunicamycin; and allantoin based on microarray and RNA-seq studies. Human ortholog(s) of this gene implicated in congenital muscular dystrophy-dystroglycanopathy type A13. Human B4GAT1 enables glucuronosyltransferase activity. Is predicted to encode a protein with the following domain: Glycosyl-transferase for dystroglycan. Is an ortholog of human B4GAT1 (beta-1,4-glucuronyltransferase 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0111238 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:15685) | ||||
| Molecular_info | Corresponding_CDS | F56H6.6 | |||||||
| Corresponding_transcript | F56H6.6.1 | ||||||||
| Associated_feature | WBsf220423 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00003833 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00032991 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048786 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1028109 | ||||||||
| Expr1152535 | |||||||||
| Drives_construct | WBCnstr00031617 | ||||||||
| Construct_product | WBCnstr00031617 | ||||||||
| Microarray_results (14) | |||||||||
| Expression_cluster (76) | |||||||||
| Interaction (21) | |||||||||
| Map_info | Map | I | Position | 13.1105 | |||||
| Positive | Positive_clone | F56H6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065080 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
