WormBase Tree Display for Gene: WBGene00017546
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| WBGene00017546 | SMap | S_parent | Sequence | F18A1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | rpa-1 | |||||||
| Sequence_name | F18A1.5 | ||||||||
| Molecular_name | F18A1.5 | ||||||||
| F18A1.5.1 | |||||||||
| CE04405 | |||||||||
| Other_name | CeRPA | Paper_evidence | WBPaper00025014 | ||||||
| WBPaper00031956 | |||||||||
| CeRPA73 | Paper_evidence | WBPaper00040684 | |||||||
| CELE_F18A1.5 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | rpa-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:59 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 07 Feb 2007 08:57:38 | WBPerson2970 | Name_change | CGC_name | rpa-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rpa | ||||||||
| Allele (28) | |||||||||
| Strain | WBStrain00002922 | ||||||||
| WBStrain00051041 | |||||||||
| WBStrain00051042 | |||||||||
| WBStrain00051038 | |||||||||
| WBStrain00051040 | |||||||||
| WBStrain00049345 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (29) | |||||||||
| Ortholog (43) | |||||||||
| Paralog | WBGene00019858 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00019859 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | rpa-1 encodes the C. elegans ortholog of the replication protein A (RPA) large subunit; by homology, RPA-1 is predicted to function as a DNA-binding and oligonucleotide oligosaccharide-binding (OB) protein that is required for DNA replication, repair, and recombination; large-scale RNAi screens indicate that rpa-1 is essential for embryonic development; RPA-1 physically interacts with RPA-2, the RPA medium subunit, in vivo; in situ hybridization studies indicate that rpa-1 transcripts are expressed in germ cells. | Paper_evidence | WBPaper00003859 | |||||
| WBPaper00006332 | |||||||||
| WBPaper00025138 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 05 Aug 2012 00:00:00 | ||||||||
| Automated_description | Enables enzyme binding activity. Involved in positive regulation of nematode male tail tip morphogenesis. Located in nucleoplasm. Expressed in germ line. Is an ortholog of human RPA1 (replication protein A1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | EFO:MONDO:0000148 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10289) | ||||
| Molecular_info | Corresponding_CDS | F18A1.5 | |||||||
| Corresponding_transcript | F18A1.5.1 | ||||||||
| Other_sequence | CRC01064_1 | ||||||||
| CR12316 | |||||||||
| CRC02515_1 | |||||||||
| CBC05878_1 | |||||||||
| CJC04055_1 | |||||||||
| CR01354 | |||||||||
| CBC04800_1 | |||||||||
| CR07414 | |||||||||
| CR02414 | |||||||||
| CGC00393_1 | |||||||||
| Associated_feature | WBsf644400 | ||||||||
| WBsf654892 | |||||||||
| WBsf988522 | |||||||||
| WBsf988523 | |||||||||
| WBsf1012577 | |||||||||
| WBsf221621 | |||||||||
| WBsf221622 | |||||||||
| WBsf221623 | |||||||||
| WBsf221624 | |||||||||
| Experimental_info | RNAi_result (22) | ||||||||
| Expr_pattern | Expr997 | ||||||||
| Expr5786 | |||||||||
| Expr14743 | |||||||||
| Expr1026599 | |||||||||
| Expr1037533 | |||||||||
| Expr1148880 | |||||||||
| Expr2015414 | |||||||||
| Expr2033649 | |||||||||
| Drives_construct | WBCnstr00003434 | ||||||||
| WBCnstr00007714 | |||||||||
| WBCnstr00027218 | |||||||||
| Construct_product | WBCnstr00007714 | ||||||||
| WBCnstr00015955 | |||||||||
| WBCnstr00019320 | |||||||||
| WBCnstr00027218 | |||||||||
| Antibody | WBAntibody00002090 | ||||||||
| WBAntibody00002097 | |||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (171) | |||||||||
| Interaction (359) | |||||||||
| Map_info | Map | II | Position | 0.5081 | |||||
| Positive | Positive_clone | F18A1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (33) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
