WormBase Tree Display for Gene: WBGene00017265
expand all nodes | collapse all nodes | view schema
WBGene00017265 | SMap | S_parent | Sequence | F08F3 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | snpc-1.3 | Person_evidence | WBPerson2290 | |||||
Sequence_name | F08F3.9 | ||||||||
Molecular_name (6) | |||||||||
Other_name | CELE_F08F3.9 | Accession_evidence | NDB | BX284605 | |||||
Public_name | snpc-1.3 | ||||||||
DB_info | Database | AceView | gene | 5F916 | |||||
WormQTL | gene | WBGene00017265 | |||||||
WormFlux | gene | WBGene00017265 | |||||||
NDB | locus_tag | CELE_F08F3.9 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00017265|UniProtKB=Q7JNN6 | |||||||
family | PTHR15131 | ||||||||
NCBI | gene | 178929 | |||||||
RefSeq | protein | NM_001028601.2 | |||||||
NM_001028602.3 | |||||||||
TREEFAM | TREEFAM_ID | TF317804 | |||||||
TrEMBL | UniProtAcc | Q7JNN6 | |||||||
Q22950 | |||||||||
UniProt_GCRP | UniProtAcc | Q7JNN6 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 04 Jul 2013 14:01:25 | WBPerson2970 | Name_change | CGC_name | snpc-1.3 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | snpc | ||||||||
Allele (39) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00076840 | ||||||||
00076841 | |||||||||
00076842 | |||||||||
00076843 | |||||||||
Ortholog (28) | |||||||||
Paralog | WBGene00012715 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00015513 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00019894 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
Structured_description | Automated_description | Predicted to enable sequence-specific DNA binding activity. Predicted to be involved in snRNA transcription by RNA polymerase II and snRNA transcription by RNA polymerase III. Predicted to be part of snRNA-activating protein complex. Expressed in gonad; metacorpus; nerve ring; and terminal bulb. Is an ortholog of human SNAPC1 (small nuclear RNA activating complex polypeptide 1). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F08F3.9a | |||||||
F08F3.9b | |||||||||
Corresponding_transcript | F08F3.9a.1 | ||||||||
F08F3.9b.1 | |||||||||
Associated_feature | WBsf718310 | ||||||||
WBsf1000000 | |||||||||
WBsf1000001 | |||||||||
WBsf1019630 | |||||||||
WBsf1019631 | |||||||||
WBsf233678 | |||||||||
Experimental_info | RNAi_result | WBRNAi00000557 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00113563 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00044022 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00012911 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00093014 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00030656 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00044016 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr4012 | ||||||||
Expr7498 | |||||||||
Expr1011352 | |||||||||
Expr1147990 | |||||||||
Expr2015958 | |||||||||
Expr2034193 | |||||||||
Drives_construct (2) | |||||||||
Construct_product | WBCnstr00027443 | ||||||||
Microarray_results (21) | |||||||||
Expression_cluster (174) | |||||||||
Interaction | WBInteraction000031263 | ||||||||
WBInteraction000031320 | |||||||||
WBInteraction000032062 | |||||||||
WBInteraction000568520 | |||||||||
WBInteraction000571488 | |||||||||
WBInteraction000571492 | |||||||||
Map_info | Map | V | Position | -1.94455 | |||||
Positive | Positive_clone | F08F3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00055090 | ||||||||
WBPaper00061037 | |||||||||
WBPaper00062604 | |||||||||
WBPaper00063930 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |