WormBase Tree Display for Gene: WBGene00017221
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WBGene00017221 | SMap | S_parent | Sequence | F07G6 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | dgn-3 | Person_evidence | WBPerson345 | |||||
Sequence_name | F07G6.1 | ||||||||
Molecular_name | F07G6.1 | ||||||||
F07G6.1.1 | |||||||||
CE53665 | |||||||||
Other_name | CELE_F07G6.1 | Accession_evidence | NDB | BX284606 | |||||
Public_name | dgn-3 | ||||||||
DB_info | Database | AceView | gene | XC341 | |||||
WormQTL | gene | WBGene00017221 | |||||||
WormFlux | gene | WBGene00017221 | |||||||
NDB | locus_tag | CELE_F07G6.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00017221|UniProtKB=Q19173 | |||||||
family | PTHR21559 | ||||||||
NCBI | gene | 184149 | |||||||
RefSeq | protein | NM_075918.3 | |||||||
TREEFAM | TREEFAM_ID | TF343420 | |||||||
TrEMBL | UniProtAcc | Q19173 | |||||||
UniProt_GCRP | UniProtAcc | Q19173 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 09 Feb 2005 16:32:53 | WBPerson2970 | Name_change | CGC_name | dgn-3 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | dgn | ||||||||
Allele (109) | |||||||||
Strain | WBStrain00005039 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00063725 | ||||||||
00122657 | |||||||||
Ortholog | WBGene00132739 | Caenorhabditis japonica | From_analysis | TreeFam | |||||
WBGene00066675 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||||
WormBase-Compara | |||||||||
FL83_04054 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
GCK72_022822 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
Paralog | WBGene00018943 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Structured_description | Automated_description | Predicted to be located in membrane. Predicted to be part of dystrophin-associated glycoprotein complex. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F07G6.1 | |||||||
Corresponding_CDS_history | F07G6.1:wp184 | ||||||||
F07G6.1:wp272 | |||||||||
Corresponding_transcript | F07G6.1.1 | ||||||||
Associated_feature | WBsf1022341 | ||||||||
Experimental_info | RNAi_result | WBRNAi00043932 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00012844 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1018407 | ||||||||
Expr1147905 | |||||||||
Expr2010869 | |||||||||
Expr2029108 | |||||||||
Microarray_results (15) | |||||||||
Expression_cluster (24) | |||||||||
SAGE_tag | SAGE:tttttgttat | Strand | Antisense | ||||||
SAGE:tatccaaatgtatagtg | Strand | Antisense | |||||||
SAGE:cacttcaaac | Strand | Antisense | |||||||
SAGE:acaattgtgt | Strand | Sense | |||||||
Unambiguously_mapped | |||||||||
SAGE:gaaatcctgt | Strand | Sense | |||||||
Unambiguously_mapped | |||||||||
SAGE:tccgcgaaaatgtgaca | Strand | Sense | |||||||
Unambiguously_mapped | |||||||||
Interaction (32) | |||||||||
Map_info | Map | X | Position | -17.6467 | Error | 0.046728 | |||
Positive | Positive_clone | F07G6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 5050 | |||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00027231 | ||||||||
WBPaper00027321 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |