WormBase Tree Display for Gene: WBGene00016960
expand all nodes | collapse all nodes | view schema
WBGene00016960 | SMap | S_parent | Sequence | C56C10 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | vps | ||||||
Allele (31) | |||||||
In_cluster | conserved_miRNA_siRNA_cluster | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (18) | |||||||
Ortholog (41) | |||||||
Paralog | WBGene00006757 | Caenorhabditis elegans | From_analysis | Panther | |||
WormBase-Compara | |||||||
WBGene00009654 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00015130 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00016643 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00020298 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
Structured_description | Automated_description | Involved in spermatocyte division. Predicted to be located in lysosome. Predicted to be part of CORVET complex. Expressed in intestine; pharynx; and spermatheca. Used to study ARC syndrome. Human ortholog(s) of this gene implicated in several diseases, including arthrogryposis multiplex congenita; arthrogryposis, renal dysfunction, and cholestasis 1; and progressive familial intrahepatic cholestasis. Is an ortholog of human VPS33B (VPS33B late endosome and lysosome associated). | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Disease_info | Experimental_model | DOID:0050763 | Homo sapiens | Paper_evidence | WBPaper00032464 | ||
Curator_confirmed | WBPerson38202 | ||||||
Date_last_updated | 30 May 2018 00:00:00 | ||||||
Potential_model | DOID:557 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12712) | |||
DOID:0111353 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12712) | ||||
DOID:0070221 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12712) | ||||
DOID:13580 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12712) | ||||
DOID:0080954 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12712) | ||||
Models_disease_in_annotation | WBDOannot00000535 | ||||||
Molecular_info | Corresponding_CDS | C56C10.1 | |||||
Corresponding_transcript | C56C10.1.1 | ||||||
Other_sequence | Tcol_isotig02052 | ||||||
CR04921 | |||||||
Hbac_isotig05781 | |||||||
Dviv_isotig29676 | |||||||
Oden_isotig27960 | |||||||
CRC09241_1 | |||||||
Acan_isotig14752 | |||||||
Associated_feature | WBsf644309 | ||||||
WBsf657701 | |||||||
WBsf221470 | |||||||
Experimental_info | RNAi_result (14) | ||||||
Expr_pattern | Expr12007 | ||||||
Expr13085 | |||||||
Expr1012862 | |||||||
Expr1037275 | |||||||
Expr1147239 | |||||||
Expr2018024 | |||||||
Expr2036161 | |||||||
Drives_construct | WBCnstr00019957 | ||||||
WBCnstr00027677 | |||||||
WBCnstr00038575 | |||||||
Construct_product | WBCnstr00019957 | ||||||
WBCnstr00027677 | |||||||
WBCnstr00038575 | |||||||
Microarray_results (22) | |||||||
Expression_cluster (118) | |||||||
Interaction (86) | |||||||
Map_info | Map | II | Position | -0.080891 | Error | 0.00486 | |
Positive | Positive_clone | C56C10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00031805 | ||||||
WBPaper00032464 | |||||||
WBPaper00038491 | |||||||
WBPaper00050040 | |||||||
WBPaper00055090 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |