WormBase Tree Display for Gene: WBGene00016930
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WBGene00016930 | SMap | S_parent | Sequence | C54G6 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | madf-6 | Person_evidence | WBPerson260 | |||
WBPerson1997 | |||||||
Sequence_name | C54G6.1 | ||||||
Molecular_name | C54G6.1a | ||||||
C54G6.1a.1 | |||||||
CE17604 | |||||||
C54G6.1b | |||||||
CE27886 | |||||||
C54G6.1b.1 | |||||||
Other_name | C54G6.e | Curator_confirmed | WBPerson1983 | ||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||
CELE_C54G6.1 | Accession_evidence | NDB | BX284601 | ||||
Public_name | madf-6 | ||||||
DB_info | Database | AceView | gene | 1B486 | |||
WormQTL | gene | WBGene00016930 | |||||
WormFlux | gene | WBGene00016930 | |||||
NDB | locus_tag | CELE_C54G6.1 | |||||
NCBI | gene | 171680 | |||||
RefSeq | protein | NM_058406.5 | |||||
NM_058405.6 | |||||||
TrEMBL | UniProtAcc | Q965K4 | |||||
H2KZF9 | |||||||
UniProt_GCRP | UniProtAcc | H2KZF9 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | madf | ||||||
Allele (85) | |||||||
Strain | WBStrain00047513 | ||||||
RNASeq_FPKM (74) | |||||||
Ortholog (20) | |||||||
Structured_description | Automated_description | Enriched in several structures, including AVH; MSaapapa; MSpapapa; germ line; and head mesodermal cell based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; skn-1; and hsf-1 based on microarray; RNA-seq; and proteomic studies. Is affected by ten chemicals including manganese chloride; stavudine; and Zidovudine based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: MADF domain. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | C54G6.1a | |||||
C54G6.1b | |||||||
Corresponding_transcript | C54G6.1a.1 | ||||||
C54G6.1b.1 | |||||||
Other_sequence | SR03678 | ||||||
CRC09981_1 | |||||||
CBC13073_1 | |||||||
OF01056 | |||||||
CR01758 | |||||||
MAC01820_1 | |||||||
MPC01129_1 | |||||||
MPC00626_1 | |||||||
Associated_feature | WBsf648925 | ||||||
WBsf218947 | |||||||
WBsf218948 | |||||||
Experimental_info | RNAi_result | WBRNAi00030164 | Inferred_automatically | RNAi_primary | |||
WBRNAi00001941 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00043185 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1017678 | ||||||
Expr1037263 | |||||||
Expr1147163 | |||||||
Expr2013343 | |||||||
Expr2031575 | |||||||
Microarray_results (27) | |||||||
Expression_cluster (101) | |||||||
Interaction | WBInteraction000186684 | ||||||
WBInteraction000304568 | |||||||
WBInteraction000310484 | |||||||
WBInteraction000314007 | |||||||
WBInteraction000435306 | |||||||
WBInteraction000444009 | |||||||
Map_info | Map | I | Position | -17.409 | Error | 0.001843 | |
Positive | Positive_clone | C54G6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |