WormBase Tree Display for Gene: WBGene00016905
expand all nodes | collapse all nodes | view schema
| WBGene00016905 | SMap | S_parent | Sequence | C53D5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ztf-3 | Person_evidence | WBPerson1997 | |||||
| Sequence_name | C53D5.4 | ||||||||
| Molecular_name (18) | |||||||||
| Other_name | CELE_C53D5.4 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | ztf-3 | ||||||||
| DB_info | Database | AceView | gene | 1A760 | |||||
| WormQTL | gene | WBGene00016905 | |||||||
| WormFlux | gene | WBGene00016905 | |||||||
| NDB | locus_tag | CELE_C53D5.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00016905|UniProtKB=Q9N5V6 | |||||||
| family | PTHR24399 | ||||||||
| NCBI | gene | 171617 | |||||||
| RefSeq | protein | NM_001373713.1 | |||||||
| NM_001381421.1 | |||||||||
| NM_001381400.1 | |||||||||
| NM_001306290.3 | |||||||||
| NM_001373725.1 | |||||||||
| NM_001306291.3 | |||||||||
| TrEMBL | UniProtAcc | V6CJ73 | |||||||
| Q9N5V6 | |||||||||
| V6CLN7 | |||||||||
| V6CKB8 | |||||||||
| V6CLJ4 | |||||||||
| V6CLP3 | |||||||||
| UniProt_GCRP | UniProtAcc | Q9N5V6 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 18 Jul 2005 13:34:00 | WBPerson2970 | Name_change | CGC_name | ztf-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ztf | ||||||||
| Allele (64) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00095625 | ||||||||
| 00095626 | |||||||||
| 00095627 | |||||||||
| 00095628 | |||||||||
| 00095629 | |||||||||
| 00105297 | |||||||||
| 00105428 | |||||||||
| Ortholog (22) | |||||||||
| Paralog | WBGene00000483 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WBGene00001207 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00003015 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00009448 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00013240 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Automated_description | Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleoplasm. Expressed in ASEL; ASER; neurons; pharynx; and rectum. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C53D5.4a | |||||||
| C53D5.4b | |||||||||
| C53D5.4c | |||||||||
| C53D5.4d | |||||||||
| C53D5.4e | |||||||||
| C53D5.4f | |||||||||
| Corresponding_CDS_history | C53D5.4:wp213 | ||||||||
| Corresponding_transcript | C53D5.4a.1 | ||||||||
| C53D5.4b.1 | |||||||||
| C53D5.4c.1 | |||||||||
| C53D5.4d.1 | |||||||||
| C53D5.4e.1 | |||||||||
| C53D5.4f.1 | |||||||||
| Other_sequence | FG581318.1 | ||||||||
| FG353157.1 | |||||||||
| MAC02250_1 | |||||||||
| FG347735.1 | |||||||||
| Associated_feature | WBsf648898 | ||||||||
| WBsf663861 | |||||||||
| WBsf978453 | |||||||||
| WBsf982458 | |||||||||
| WBsf218884 | |||||||||
| Transcription_factor | WBTranscriptionFactor000975 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00024897 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00024895 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00030116 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00024896 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00043095 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00003216 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00002107 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr3941 | ||||||||
| Expr7484 | |||||||||
| Expr7898 | |||||||||
| Expr1018181 | |||||||||
| Expr1037254 | |||||||||
| Expr1147059 | |||||||||
| Expr2018202 | |||||||||
| Expr2036340 | |||||||||
| Drives_construct | WBCnstr00011765 | ||||||||
| WBCnstr00012628 | |||||||||
| WBCnstr00012975 | |||||||||
| WBCnstr00027713 | |||||||||
| Construct_product | WBCnstr00017349 | ||||||||
| WBCnstr00027713 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (84) | |||||||||
| Interaction (18) | |||||||||
| Map_info | Map | I | Position | -19.1099 | Error | 0.005373 | |||
| Positive | Positive_clone | C53D5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5341 | |||||||
| 4166 | |||||||||
| 4872 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00030829 | ||||||||
| WBPaper00062117 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
