WormBase Tree Display for Gene: WBGene00016354
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WBGene00016354 | SMap | S_parent | Sequence | C33F10 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||
Name | CGC_name | rig-6 | Person_evidence | WBPerson1103 | |||
Sequence_name | C33F10.5 | ||||||
Molecular_name | C33F10.5c | ||||||
C33F10.5a | |||||||
CE31679 | |||||||
C33F10.5d | |||||||
CE37327 | |||||||
C33F10.5c.1 | |||||||
C33F10.5d.1 | |||||||
Other_name | tag-227 | Person_evidence | WBPerson201 | ||||
CELE_C33F10.5 | Accession_evidence | NDB | BX284602 | ||||
Public_name | rig-6 | ||||||
DB_info | Database (11) | ||||||
Species | Caenorhabditis elegans | ||||||
History (2) | |||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | rig | ||||||
Allele (166) | |||||||
Possibly_affected_by | WBVar02157851 | ||||||
Strain | WBStrain00036006 | ||||||
WBStrain00036110 | |||||||
WBStrain00036147 | |||||||
WBStrain00036345 | |||||||
WBStrain00055147 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (36) | |||||||
Ortholog (51) | |||||||
Paralog (19) | |||||||
Structured_description | Concise_description | rig-6 encodes a protein with immunoglobulin and fibronectin type III domains and is similar to vertebrate contactins; based upon large-scale RNAi screens, rig-6 activity appears to be required for reproduction and positive regulation of body size; rig-6::gfp reporter fusion are expressed in neurons, particularly the URX ring interneurons. | Paper_evidence | WBPaper00004651 | |||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 19 Jul 2007 00:00:00 | ||||||
Automated_description | Predicted to enable cell-cell adhesion mediator activity. Involved in several processes, including axon guidance; negative regulation of defecation rhythm; and regulation of locomotion. Located in axon; neuronal cell body; and synapse. Expressed in several structures, including body wall musculature; neurons; non-striated muscle; rectal epithelium; and spermatheca. Human ortholog(s) of this gene implicated in several diseases, including Compton-North congenital myopathy; familial adult myoclonic epilepsy 5; and high grade glioma. Is an ortholog of human CNTN6 (contactin 6). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Disease_info | Potential_model | DOID:0111691 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2172) | ||
DOID:850 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2172) | ||||
DOID:3070 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2172) | ||||
DOID:0080101 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2171) | ||||
Molecular_info | Corresponding_CDS | C33F10.5c | |||||
C33F10.5d | |||||||
Corresponding_CDS_history | C33F10.5a:wp261 | ||||||
C33F10.5b:wp261 | |||||||
Corresponding_transcript | C33F10.5a | ||||||
C33F10.5c.1 | |||||||
C33F10.5d.1 | |||||||
Other_sequence (26) | |||||||
Associated_feature (29) | |||||||
Experimental_info | RNAi_result (11) | ||||||
Expr_pattern | Expr1767 | ||||||
Expr8850 | |||||||
Expr10584 | |||||||
Expr16093 | |||||||
Expr1025818 | |||||||
Expr1037002 | |||||||
Expr1145797 | |||||||
Expr2015355 | |||||||
Expr2033589 | |||||||
Drives_construct (4) | |||||||
Construct_product | WBCnstr00017011 | ||||||
WBCnstr00028138 | |||||||
Microarray_results (38) | |||||||
Expression_cluster (196) | |||||||
Interaction (12) | |||||||
Map_info | Map | II | Position | -3.02721 | Error | 0.005159 | |
Positive | Positive_clone | C33F10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Multi_point | 5556 | |||||
5328 | |||||||
Pseudo_map_position | |||||||
Reference (13) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |