WormBase Tree Display for Gene: WBGene00016167
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WBGene00016167 | SMap | S_parent | Sequence | C27F2 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | vps-22 | Person_evidence | WBPerson3188 | |||
Sequence_name | C27F2.5 | ||||||
Molecular_name | C27F2.5 | ||||||
C27F2.5.1 | |||||||
CE26875 | |||||||
C27F2.5.2 | |||||||
Other_name | CELE_C27F2.5 | Accession_evidence | NDB | BX284603 | |||
Public_name | vps-22 | ||||||
DB_info | Database | AceView | gene | 3G52+3G50 | |||
3G50 | |||||||
WormQTL | gene | WBGene00016167 | |||||
WormFlux | gene | WBGene00016167 | |||||
NDB | locus_tag | CELE_C27F2.5 | |||||
Panther | gene | CAEEL|WormBase=WBGene00016167|UniProtKB=Q18258 | |||||
family | PTHR12806 | ||||||
NCBI | gene | 175672 | |||||
RefSeq | protein | NM_065651.8 | |||||
TREEFAM | TREEFAM_ID | TF105950 | |||||
TrEMBL | UniProtAcc | Q18258 | |||||
UniProt_GCRP | UniProtAcc | Q18258 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | vps | ||||||
Allele (30) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (7) | |||||||
Contained_in_operon | CEOP3248 | ||||||
Ortholog (32) | |||||||
Structured_description | Concise_description | C27F2.5 encodes the C. elegans ortholog of the conserved vacuolar protein sorting protein EAP30/SNF8/VPS22; by homology, the product of C27F2.5 is predicted to be a component of an ESCRT-II complex (Endosomal Sorting Complex Required for Transport) that functions in endosomal transport. | Paper_evidence | WBPaper00026641 | |||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 31 Jul 2007 00:00:00 | ||||||
Automated_description | Predicted to be involved in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway. Predicted to be part of ESCRT II complex. Expressed in body wall musculature; pharyngeal muscle cell; pharynx; and vulval muscle. Is an ortholog of human SNF8 (SNF8 subunit of ESCRT-II). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | C27F2.5 | |||||
Corresponding_CDS_history | C27F2.5a:wp135 | ||||||
C27F2.5b:wp135 | |||||||
Corresponding_transcript | C27F2.5.1 | ||||||
C27F2.5.2 | |||||||
Other_sequence (54) | |||||||
Associated_feature | WBsf651025 | ||||||
WBsf226616 | |||||||
Experimental_info | RNAi_result (17) | ||||||
Expr_pattern | Expr12774 | ||||||
Expr12778 | |||||||
Expr15896 | |||||||
Expr1013359 | |||||||
Expr1036920 | |||||||
Expr1145400 | |||||||
Expr2018014 | |||||||
Expr2036151 | |||||||
Drives_construct | WBCnstr00022878 | ||||||
WBCnstr00028279 | |||||||
WBCnstr00042586 | |||||||
Construct_product | WBCnstr00022878 | ||||||
WBCnstr00028279 | |||||||
WBCnstr00042586 | |||||||
Microarray_results (34) | |||||||
Expression_cluster (77) | |||||||
Interaction (48) | |||||||
Map_info | Map | III | Position | -2.30024 | Error | 0.00462 | |
Positive | Positive_clone | C27F2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00026641 | ||||||
WBPaper00038372 | |||||||
WBPaper00038491 | |||||||
WBPaper00040674 | |||||||
WBPaper00043249 | |||||||
WBPaper00055090 | |||||||
WBPaper00064934 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |