WormBase Tree Display for Gene: WBGene00015971
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WBGene00015971 | SMap | S_parent | Sequence | C18E3 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | swsn | ||||||
Allele (31) | |||||||
Strain | WBStrain00029672 | ||||||
WBStrain00031318 | |||||||
WBStrain00037543 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (16) | |||||||
Contained_in_operon | CEOP1946 | ||||||
Ortholog (44) | |||||||
Paralog | WBGene00044072 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | |||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00044585 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | ||||
WBGene00020779 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00010523 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Structured_description | Concise_description | swsn-2.2 encodes a homolog of Swp73/BAF60, a component of the SWI/SNF complex that is conserved from yeast to mammals and that is involved in chromatin remodeling; swsn-2.2 is probably required during mitosis of the T cells for asymmetric cell division. | Paper_evidence | WBPaper00004350 | |||
Curator_confirmed | WBPerson1843 | ||||||
WBPerson567 | |||||||
Date_last_updated | 01 Aug 2011 00:00:00 | ||||||
Automated_description | Predicted to enable RNA polymerase II-specific DNA-binding transcription factor binding activity and transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Located in condensed chromosome; nuclear envelope; and nucleoplasm. Expressed in several structures, including HSNL and HSNR. Used to study alcohol use disorder. Human ortholog(s) of this gene implicated in Coffin-Siris syndrome 11. Is an ortholog of human SMARCD1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1); SMARCD2 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2); and SMARCD3 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Disease_info | Experimental_model | DOID:1574 | Homo sapiens | Paper_evidence | WBPaper00046494 | ||
Curator_confirmed | WBPerson324 | ||||||
Date_last_updated | 20 May 2019 00:00:00 | ||||||
Potential_model | EFO:MONDO:0009506 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11107) | |||
DOID:0112372 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11106) | ||||
Models_disease_asserted | WBDOannot00000665 | ||||||
Molecular_info | Corresponding_CDS | C18E3.2 | |||||
Corresponding_transcript | C18E3.2.1 | ||||||
Other_sequence (12) | |||||||
Associated_feature | WBsf643191 | ||||||
WBsf643192 | |||||||
WBsf656176 | |||||||
WBsf983356 | |||||||
WBsf217501 | |||||||
Experimental_info | RNAi_result | WBRNAi00007940 | Inferred_automatically | RNAi_primary | |||
WBRNAi00040936 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00061241 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00093893 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00069103 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00016521 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00061240 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00093974 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00093943 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr16204 | ||||||
Expr16205 | |||||||
Expr1016633 | |||||||
Expr1036825 | |||||||
Expr1144983 | |||||||
Expr2017157 | |||||||
Expr2035293 | |||||||
Drives_construct | WBCnstr00017369 | ||||||
WBCnstr00028413 | |||||||
WBCnstr00042800 | |||||||
Construct_product | WBCnstr00028413 | ||||||
WBCnstr00042800 | |||||||
Regulate_expr_cluster (3) | |||||||
Antibody | WBAntibody00002683 | ||||||
Microarray_results (24) | |||||||
Expression_cluster (135) | |||||||
Interaction (345) | |||||||
Map_info | Map | I | Position | -1.58056 | Error | 0.006827 | |
Positive | Positive_clone | C18E3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00031554 | ||||||
WBPaper00038491 | |||||||
WBPaper00043854 | |||||||
WBPaper00046494 | |||||||
WBPaper00049018 | |||||||
WBPaper00055090 | |||||||
WBPaper00060275 | |||||||
WBPaper00065308 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |