WormBase Tree Display for Gene: WBGene00015297
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WBGene00015297 | SMap | S_parent | Sequence | C01F1 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | sco-1 | Person_evidence | WBPerson2601 | |||
Sequence_name | C01F1.2 | ||||||
Molecular_name | C01F1.2 | ||||||
C01F1.2.1 | |||||||
CE06743 | |||||||
Other_name | CELE_C01F1.2 | Accession_evidence | NDB | BX284602 | |||
Public_name | sco-1 | ||||||
DB_info | Database (11) | ||||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | sco | ||||||
Allele (22) | |||||||
Strain | WBStrain00037701 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (12) | |||||||
Contained_in_operon | CEOP2120 | ||||||
Ortholog (34) | |||||||
Structured_description | Concise_description | sco-1 is orthologous to the human gene SCO (CYTOCHROME OXIDASE DEFICIENT, YEAST) HOMOLOG 1 (SCO1; OMIM:603644), which when mutated leads to early-onset hepatic failure; the SCO-1 protein is predicted to be mitochondrial with 68% accuracy. | Paper_evidence | WBPaper00004424 | |||
WBPaper00004637 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
WBPerson1823 | |||||||
WBPerson567 | |||||||
Date_last_updated | 18 Mar 2009 00:00:00 | ||||||
Automated_description | Predicted to enable copper chaperone activity and copper ion binding activity. Predicted to be involved in mitochondrial cytochrome c oxidase assembly. Predicted to be located in mitochondrial inner membrane. Used to study mitochondrial metabolism disease. Human ortholog(s) of this gene implicated in hypertrophic cardiomyopathy; mitochondrial complex IV deficiency nuclear type 2; and myopia. Is an ortholog of human SCO1 (synthesis of cytochrome C oxidase 1). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Disease_info | Experimental_model | DOID:700 | Homo sapiens | Paper_evidence | WBPaper00064182 | ||
Curator_confirmed | WBPerson324 | ||||||
Date_last_updated | 12 Oct 2022 00:00:00 | ||||||
Potential_model (5) | |||||||
Models_disease_in_annotation | WBDOannot00001337 | ||||||
Molecular_info | Corresponding_CDS | C01F1.2 | |||||
Corresponding_transcript | C01F1.2.1 | ||||||
Other_sequence (56) | |||||||
Associated_feature | WBsf644095 | ||||||
WBsf981184 | |||||||
WBsf221103 | |||||||
Experimental_info | RNAi_result (23) | ||||||
Expr_pattern | Expr1021702 | ||||||
Expr1036551 | |||||||
Expr1143417 | |||||||
Expr2015645 | |||||||
Expr2033877 | |||||||
Microarray_results (20) | |||||||
Expression_cluster (87) | |||||||
Interaction (38) | |||||||
Map_info | Map | II | Position | -4.93285 | Error | 0.018941 | |
Positive | Positive_clone | C01F1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00029435 | ||||||
WBPaper00033751 | |||||||
WBPaper00038491 | |||||||
WBPaper00053317 | |||||||
WBPaper00055090 | |||||||
WBPaper00059862 | |||||||
WBPaper00061547 | |||||||
WBPaper00062979 | |||||||
WBPaper00064182 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |