WormBase Tree Display for Gene: WBGene00015249
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| WBGene00015249 | SMap | S_parent | Sequence | CHROMOSOME_IV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | otub-4 | Person_evidence | WBPerson260 | |||||
| Sequence_name | B0546.2 | ||||||||
| Molecular_name | B0546.2a | ||||||||
| B0546.2a.1 | |||||||||
| CE40597 | |||||||||
| B0546.2b | |||||||||
| CE48773 | |||||||||
| B0546.2b.1 | |||||||||
| Other_name | CELE_B0546.2 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | otub-4 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 28 Sep 2012 14:29:00 | WBPerson2970 | Name_change | CGC_name | otub-4 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | otub | ||||||||
| Allele (125) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00032409 | ||||||||
| 00032410 | |||||||||
| 00032411 | |||||||||
| Contained_in_operon | CEOP4084 | ||||||||
| Ortholog (34) | |||||||||
| Paralog | WBGene00001110 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WBGene00001112 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00009007 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable K63-linked deubiquitinase activity and cysteine-type deubiquitinase activity. Is an ortholog of human OTUD5 (OTU deubiquitinase 5). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | B0546.2a | |||||||
| B0546.2b | |||||||||
| Corresponding_CDS_history | B0546.2:wp168 | ||||||||
| Corresponding_transcript | B0546.2a.1 | ||||||||
| B0546.2b.1 | |||||||||
| Other_sequence (21) | |||||||||
| Associated_feature | WBsf995946 | ||||||||
| WBsf1017068 | |||||||||
| WBsf229882 | |||||||||
| WBsf229883 | |||||||||
| WBsf229884 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00028201 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00061977 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00085080 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00039182 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1017435 | ||||||||
| Expr1036532 | |||||||||
| Expr1143327 | |||||||||
| Expr2014668 | |||||||||
| Expr2032901 | |||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (112) | |||||||||
| Interaction | WBInteraction000324819 | ||||||||
| WBInteraction000357105 | |||||||||
| WBInteraction000504277 | |||||||||
| WBInteraction000575440 | |||||||||
| WBInteraction000580897 | |||||||||
| Map_info | Map | IV | Position | -4.56952 | |||||
| Positive | Positive_clone | B0546 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00062625 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
