WormBase Tree Display for Gene: WBGene00014080
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| WBGene00014080 | SMap | S_parent | Sequence | ZK792 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | atg-4.2 | Person_evidence | WBPerson649 | |||||
| Sequence_name | ZK792.8 | ||||||||
| Molecular_name | ZK792.8 | ||||||||
| ZK792.8.1 | |||||||||
| CE24740 | |||||||||
| Other_name | CELE_ZK792.8 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | atg-4.2 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 29 Feb 2008 11:29:00 | WBPerson2970 | Name_change | CGC_name | atg-4.2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | atg | ||||||||
| Allele (47) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Contained_in_operon | CEOP4468 | ||||||||
| Ortholog (36) | |||||||||
| Paralog | WBGene00013595 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | atg-4.2 encodes a putative cysteine protease orthologous to theautophagic budding yeast protein Apg4p, and to human ATG4C (OMIM:611339)and ATG4D (OMIM:611340); ATG-4.2 is paralogous to ATG-4.1 and to humanATG4A and ATG4B; unlike C. elegans orthologs of other yeast autophagicproteins, ATG-4.2 is not required for normal dauer formation, and it hasno obvious functions in mass RNAi assays. | Paper_evidence | WBPaper00006070 | |||||
| WBPaper00031504 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 24 Feb 2008 00:00:00 | ||||||||
| Automated_description | Enables cysteine-type endopeptidase activity. Predicted to be involved in autophagy; protein transport; and proteolysis. Predicted to be located in cytoplasm. Expressed in embryonic cell; gonad; and oocyte. Is an ortholog of human ATG4D (autophagy related 4D cysteine peptidase). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZK792.8 | |||||||
| Corresponding_transcript | ZK792.8.1 | ||||||||
| Other_sequence | Oden_isotig09675 | ||||||||
| Oden_isotig09674 | |||||||||
| JI176296.1 | |||||||||
| Oden_isotig09672 | |||||||||
| Oden_isotig09673 | |||||||||
| Tcol_isotig16551 | |||||||||
| PPC09107_1 | |||||||||
| Dviv_isotig13402 | |||||||||
| FK800205.1 | |||||||||
| Associated_feature | WBsf229193 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00080480 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00059721 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr12972 | ||||||||
| Expr14339 | |||||||||
| Expr1028569 | |||||||||
| Expr1036303 | |||||||||
| Expr1163141 | |||||||||
| Expr2009493 | |||||||||
| Expr2027730 | |||||||||
| Drives_construct | WBCnstr00029327 | ||||||||
| Construct_product | WBCnstr00029327 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (90) | |||||||||
| Interaction | WBInteraction000033454 | ||||||||
| WBInteraction000039539 | |||||||||
| WBInteraction000039541 | |||||||||
| WBInteraction000039551 | |||||||||
| WBInteraction000039555 | |||||||||
| WBInteraction000039563 | |||||||||
| WBInteraction000046443 | |||||||||
| WBInteraction000046449 | |||||||||
| WBInteraction000546680 | |||||||||
| WBInteraction000560374 | |||||||||
| Map_info | Map | IV | Position | 5.1408 | Error | 0.004808 | |||
| Positive | Positive_clone | ZK792 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (13) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
