WormBase Tree Display for Gene: WBGene00013980
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WBGene00013980 | SMap | S_parent | Sequence | ZK507 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name (5) | |||||||
DB_info | Database | AceView | gene | 3K191 | |||
WormQTL | gene | WBGene00013980 | |||||
WormFlux | gene | WBGene00013980 | |||||
NDB | locus_tag | CELE_ZK507.4 | |||||
Panther | gene | CAEEL|WormBase=WBGene00013980|UniProtKB=P34636 | |||||
family | PTHR35015 | ||||||
NCBI | gene | 191338 | |||||
RefSeq | protein | NM_066616.6 | |||||
SwissProt | UniProtAcc | P34636 | |||||
TREEFAM | TREEFAM_ID | TF315672 | |||||
UniProt_GCRP | UniProtAcc | P34636 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | dos | ||||||
Allele (42) | |||||||
Strain | WBStrain00032542 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00043626 | ||||||
00043627 | |||||||
00043628 | |||||||
Ortholog (22) | |||||||
Paralog | WBGene00003887 | Caenorhabditis elegans | From_analysis | Panther | |||
WBGene00003891 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WBGene00019331 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WBGene00019640 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Structured_description | Concise_description | dos-1 encodes an unfamilar protein with no clear orthologs outside of nematodes; DOS-1 is paralogous to OSM-7, K02F3.7, and ZK507.4, has a predicted signal sequence with 12 conserved cysteine residues, and may be secreted; DOS-1 has no obvious function in mass RNAi assays. | Paper_evidence | WBPaper00028499 | |||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 29 Mar 2008 00:00:00 | ||||||
Automated_description | Predicted to enable Notch binding activity. Predicted to be involved in positive regulation of Notch signaling pathway. Predicted to be located in extracellular space. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | ZK507.4 | |||||
Corresponding_CDS_history | ZK507.4:wp144 | ||||||
Corresponding_transcript | ZK507.4.1 | ||||||
Other_sequence | CJC05627_1 | ||||||
Associated_feature | WBsf645462 | ||||||
WBsf659386 | |||||||
WBsf993572 | |||||||
WBsf225519 | |||||||
WBsf225520 | |||||||
Experimental_info | RNAi_result | WBRNAi00059466 | Inferred_automatically | RNAi_primary | |||
WBRNAi00006362 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00022036 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00088838 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1020576 | ||||||
Expr1162889 | |||||||
Expr2011032 | |||||||
Expr2029269 | |||||||
Drives_construct | WBCnstr00029398 | ||||||
Construct_product | WBCnstr00029398 | ||||||
Microarray_results (18) | |||||||
Expression_cluster (156) | |||||||
Interaction | WBInteraction000235998 | ||||||
WBInteraction000334941 | |||||||
Map_info | Map | III | Position | 0.16456 | Error | 0.000331 | |
Positive | Positive_clone | ZK507 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00032102 | ||||||
WBPaper00038400 | |||||||
WBPaper00040714 | |||||||
WBPaper00065331 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |