WormBase Tree Display for Gene: WBGene00013421

WBGene00013421 SMap: S_parent: Sequence: Y66A7AL
  Identity: Version: 2
    Name: CGC_name: fbxa-220 Person_evidence: WBPerson655
      Sequence_name: Y66A7A.1
      Molecular_name: Y66A7A.1
        Y66A7A.1.1
        CE54151
      Other_name: CELE_Y66A7A.1 Accession_evidence: NDB BX284603
      Public_name: fbxa-220
    DB_info: Database: AceView gene 3M570
        WormQTL gene WBGene00013421
        WormFlux gene WBGene00013421
        NDB locus_tag CELE_Y66A7A.1
        Panther gene CAEEL|WormBase=WBGene00013421|UniProtKB=Q7K6I8
          family PTHR23015
        NCBI gene 190489
        RefSeq protein NM_001379935.2
        TREEFAM TREEFAM_ID TF315839
        TrEMBL UniProtAcc Q7K6I8
        UniProt_GCRP UniProtAcc Q7K6I8
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:54 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 01 Mar 2007 11:55:19 WBPerson2970 Name_change: CGC_name: fbxa-220
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: fbxa
    Allele (46)
    RNASeq_FPKM (74)
    Ortholog: WBGene00155606 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00157035 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00157972 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00042195 Caenorhabditis briggsae From_analysis: WormBase-Compara
      Csp5_scaffold_06643.g36823 Caenorhabditis sinica From_analysis: WormBase-Compara
      chrIII_pilon.g9037 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog (221)
    Structured_description: Automated_description: Enriched in CEP socket cell; Y cell; and muscle cell based on single-cell RNA-seq and microarray studies. Is affected by several genes including clk-1; pgl-1; and mex-1 based on microarray and RNA-seq studies. Is affected by five chemicals including methylmercuric chloride; Rifampin; and allantoin based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: Mos1 transposase, HTH domain; FTH domain; HTH domain in Mos1 transposase; Domain of unknown function DUF38/FTH, Caenorhabditis species; and F-box A protein FB224. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y66A7A.1
    Corresponding_CDS_history: Y66A7A.1:wp229
      Y66A7A.1:wp275
    Corresponding_transcript: Y66A7A.1.1
    Associated_feature: WBsf994395
      WBsf994396
      WBsf994397
      WBsf994398
      WBsf1016011
      WBsf1016012
      WBsf1016013
      WBsf1016014
  Experimental_info: RNAi_result: WBRNAi00057918 Inferred_automatically: RNAi_primary
      WBRNAi00021247 Inferred_automatically: RNAi_primary
      WBRNAi00006244 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1020507
      Expr1035994
      Expr1161353
      Expr2011528
      Expr2029765
    Microarray_results (12)
    Expression_cluster (39)
    Interaction (44)
  Map_info: Map: III Position: 9.96392 Error: 0.098427
    Positive: Positive_clone: Y66A7A Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene