WormBase Tree Display for Gene: WBGene00012777
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WBGene00012777 | SMap | S_parent | Sequence | Y42A5A | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | lact-8 | Person_evidence | WBPerson168 | |||
Sequence_name | Y42A5A.2 | ||||||
Molecular_name | Y42A5A.2a | ||||||
Y42A5A.2a.1 | |||||||
CE43119 | |||||||
Y42A5A.2b | |||||||
CE45998 | |||||||
Y42A5A.2c | |||||||
CE46035 | |||||||
Y42A5A.2b.1 | |||||||
Y42A5A.2c.1 | |||||||
Other_name | CELE_Y42A5A.2 | Accession_evidence | NDB | BX284605 | |||
Public_name | lact-8 | ||||||
DB_info | Database | AceView | gene | 5L568 | |||
WormQTL | gene | WBGene00012777 | |||||
WormFlux | gene | WBGene00012777 | |||||
NDB | locus_tag | CELE_Y42A5A.2 | |||||
Panther | gene | CAEEL|WormBase=WBGene00012777|UniProtKB=Q9XWZ6 | |||||
family | PTHR46825 | ||||||
NCBI | gene | 189839 | |||||
RefSeq | protein | NM_001269357.3 | |||||
NM_001269359.3 | |||||||
NM_001269358.3 | |||||||
TREEFAM | TREEFAM_ID | TF315050 | |||||
TrEMBL | UniProtAcc | F3Y5Q9 | |||||
Q9XWZ6 | |||||||
F3Y5Q8 | |||||||
UniProt_GCRP | UniProtAcc | Q9XWZ6 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | lact | ||||||
Allele (53) | |||||||
Strain | WBStrain00037741 | ||||||
RNASeq_FPKM (74) | |||||||
Ortholog (24) | |||||||
Paralog | WBGene00008047 | Caenorhabditis elegans | From_analysis | TreeFam | |||
WormBase-Compara | |||||||
WBGene00012890 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
WormBase-Compara | |||||||
Structured_description | Concise_description | lact-8 encodes a beta-lactamase domain-containing protein that contains a predicted transmembrane domain in its N terminus. | Curator_confirmed | WBPerson1843 | |||
Date_last_updated | 18 Dec 2007 00:00:00 | ||||||
Automated_description | Enriched in several structures, including ABarpaapap; ABarpaappa; ABarpaappp; anterior hypodermis; and carbon dioxide sensory neurons based on RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-2; skn-1; and glp-1 based on microarray and RNA-seq studies. Is affected by twelve chemicals including levamisole; allantoin; and Sirolimus based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: Beta-lactamase-related; Beta-lactamase; and Beta-lactamase/transpeptidase-like. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | Y42A5A.2a | |||||
Y42A5A.2b | |||||||
Y42A5A.2c | |||||||
Corresponding_CDS_history | Y42A5A.2:wp195 | ||||||
Corresponding_transcript | Y42A5A.2a.1 | ||||||
Y42A5A.2b.1 | |||||||
Y42A5A.2c.1 | |||||||
Other_sequence | HBC25388_1 | ||||||
JI178465.1 | |||||||
Dviv_isotig29914 | |||||||
ES743304.1 | |||||||
Associated_feature (3) | |||||||
Experimental_info | RNAi_result | WBRNAi00056428 | Inferred_automatically | RNAi_primary | |||
WBRNAi00095078 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00020511 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00056425 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00037016 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00037017 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1011809 | ||||||
Expr1035654 | |||||||
Expr1159909 | |||||||
Expr2013000 | |||||||
Expr2031232 | |||||||
Drives_construct | WBCnstr00029848 | ||||||
Construct_product | WBCnstr00029848 | ||||||
Microarray_results (20) | |||||||
Expression_cluster (146) | |||||||
Interaction (18) | |||||||
Map_info | Map | V | Position | 2.94611 | Error | 0.000565 | |
Positive | Positive_clone | Y42A5A | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |