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WormBase Tree Display for Gene: WBGene00012566

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Name Class

WBGene00012566SMapS_parentSequenceY37H2A
IdentityVersion2
NameCGC_namefbxa-211Person_evidenceWBPerson655
Sequence_nameY37H2A.6
Molecular_nameY37H2A.6
Y37H2A.6.1
CE45353
Other_nameCELE_Y37H2A.6Accession_evidenceNDBBX284605
Public_namefbxa-211
DB_infoDatabaseAceViewgene5S609
WormQTLgeneWBGene00012566
WormFluxgeneWBGene00012566
NDBlocus_tagCELE_Y37H2A.6
PanthergeneCAEEL|WormBase=WBGene00012566|UniProtKB=Q9U2N5
familyPTHR23015
NCBIgene189629
RefSeqproteinNM_001392689.1
TREEFAMTREEFAM_IDTF322006
TrEMBLUniProtAccQ9U2N5
UniProt_GCRPUniProtAccQ9U2N5
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:53WBPerson1971EventImportedInitial conversion from CDS class of WS125
201 Mar 2007 11:55:19WBPerson2970Name_changeCGC_namefbxa-211
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classfbxa
Allele (67)
RNASeq_FPKM (74)
Contained_in_operonCEOP5577
OrthologWBGene00023907Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00037953Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00038378Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00041891Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00042195Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00150139Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00164273Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00153679Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00163828Caenorhabditis brenneriFrom_analysisWormBase-Compara
chrV_pilon.g17613Caenorhabditis elegansFrom_analysisWormBase-Compara
Paralog (223)
Structured_descriptionConcise_descriptionThis gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.Paper_evidenceWBPaper00012854
Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionEnriched in several structures, including ABplapapppp; ABprapapppp; FLP; germ line; and head mesodermal cell based on microarray; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-2; skn-1; and dpy-10 based on microarray and RNA-seq studies. Is affected by ten chemicals including methylmercuric chloride; rotenone; and manganese chloride based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: F-box-like domain superfamily; FTH domain; F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; and F-box A protein FB224.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY37H2A.6
Corresponding_CDS_historyY37H2A.6:wp183
Y37H2A.6:wp218
Corresponding_transcriptY37H2A.6.1
Other_sequenceCBC16463_1
Experimental_infoRNAi_resultWBRNAi00055954Inferred_automaticallyRNAi_primary
WBRNAi00055955Inferred_automaticallyRNAi_primary
Expr_patternExpr1014427
Expr1159477
Expr2011521
Expr2029758
Microarray_results (13)
Expression_cluster (95)
Map_infoMapVPosition14.2583Error0.015128
PositivePositive_cloneY37H2AInferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00012854
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene