WormBase Tree Display for Gene: WBGene00012566
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WBGene00012566 | SMap | S_parent | Sequence | Y37H2A | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | fbxa-211 | Person_evidence | WBPerson655 | |||||
Sequence_name | Y37H2A.6 | ||||||||
Molecular_name | Y37H2A.6 | ||||||||
Y37H2A.6.1 | |||||||||
CE45353 | |||||||||
Other_name | CELE_Y37H2A.6 | Accession_evidence | NDB | BX284605 | |||||
Public_name | fbxa-211 | ||||||||
DB_info | Database | AceView | gene | 5S609 | |||||
WormQTL | gene | WBGene00012566 | |||||||
WormFlux | gene | WBGene00012566 | |||||||
NDB | locus_tag | CELE_Y37H2A.6 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00012566|UniProtKB=Q9U2N5 | |||||||
family | PTHR23015 | ||||||||
NCBI | gene | 189629 | |||||||
RefSeq | protein | NM_001392689.1 | |||||||
TREEFAM | TREEFAM_ID | TF322006 | |||||||
TrEMBL | UniProtAcc | Q9U2N5 | |||||||
UniProt_GCRP | UniProtAcc | Q9U2N5 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 01 Mar 2007 11:55:19 | WBPerson2970 | Name_change | CGC_name | fbxa-211 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | fbxa | ||||||||
Allele (67) | |||||||||
RNASeq_FPKM (74) | |||||||||
Contained_in_operon | CEOP5577 | ||||||||
Ortholog | WBGene00023907 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||||
WBGene00037953 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
WBGene00038378 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
WBGene00041891 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
WBGene00042195 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
WBGene00150139 | Caenorhabditis brenneri | From_analysis | TreeFam | ||||||
WBGene00164273 | Caenorhabditis brenneri | From_analysis | TreeFam | ||||||
WBGene00153679 | Caenorhabditis brenneri | From_analysis | TreeFam | ||||||
WBGene00163828 | Caenorhabditis brenneri | From_analysis | WormBase-Compara | ||||||
chrV_pilon.g17613 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Paralog (223) | |||||||||
Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. | Paper_evidence | WBPaper00012854 | |||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Enriched in several structures, including ABplapapppp; ABprapapppp; FLP; germ line; and head mesodermal cell based on microarray; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-2; skn-1; and dpy-10 based on microarray and RNA-seq studies. Is affected by ten chemicals including methylmercuric chloride; rotenone; and manganese chloride based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: F-box-like domain superfamily; FTH domain; F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; and F-box A protein FB224. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y37H2A.6 | |||||||
Corresponding_CDS_history | Y37H2A.6:wp183 | ||||||||
Y37H2A.6:wp218 | |||||||||
Corresponding_transcript | Y37H2A.6.1 | ||||||||
Other_sequence | CBC16463_1 | ||||||||
Experimental_info | RNAi_result | WBRNAi00055954 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00055955 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1014427 | ||||||||
Expr1159477 | |||||||||
Expr2011521 | |||||||||
Expr2029758 | |||||||||
Microarray_results (13) | |||||||||
Expression_cluster (95) | |||||||||
Map_info | Map | V | Position | 14.2583 | Error | 0.015128 | |||
Positive | Positive_clone | Y37H2A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00012854 | ||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |