WormBase Tree Display for Gene: WBGene00012550
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| WBGene00012550 | SMap | S_parent | Sequence | Y37D8A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | spcs-2 | |||||||
| Sequence_name | Y37D8A.10 | ||||||||
| Molecular_name (3) | |||||||||
| Other_name | hpo-21 | ||||||||
| CELE_Y37D8A.10 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | spcs-2 | ||||||||
| DB_info | Database | AceView | gene | 3N965 | |||||
| WormQTL | gene | WBGene00012550 | |||||||
| WormFlux | gene | WBGene00012550 | |||||||
| NDB | locus_tag | CELE_Y37D8A.10 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00012550|UniProtKB=Q9XWW1 | |||||||
| family | PTHR13085 | ||||||||
| NCBI | gene | 176703 | |||||||
| RefSeq | protein | NM_067275.8 | |||||||
| SwissProt | UniProtAcc | Q9XWW1 | |||||||
| TREEFAM | TREEFAM_ID | TF314545 | |||||||
| UniProt_GCRP | UniProtAcc | Q9XWW1 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 26 Apr 2011 13:31:47 | WBPerson2970 | Name_change | CGC_name | hpo-21 | ||||
| 3 | 12 Nov 2018 16:28:49 | WBPerson1983 | Name_change | CGC_name | spcs-2 | ||||
| Other_name | hpo-21 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | spcs | ||||||||
| Allele (17) | |||||||||
| Strain | WBStrain00037795 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Ortholog (35) | |||||||||
| Structured_description | Automated_description | Involved in IRE1-mediated unfolded protein response. Located in sarcoplasmic reticulum. Used to study Parkinson's disease. Is an ortholog of human SPCS2 (signal peptidase complex subunit 2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info (2) | |||||||||
| Models_disease_in_annotation | WBDOannot00000252 | ||||||||
| Molecular_info | Corresponding_CDS | Y37D8A.10 | |||||||
| Corresponding_transcript | Y37D8A.10.1 | ||||||||
| Other_sequence (49) | |||||||||
| Associated_feature | WBsf645677 | ||||||||
| WBsf225936 | |||||||||
| WBsf225937 | |||||||||
| Experimental_info | RNAi_result (16) | ||||||||
| Expr_pattern | Expr9419 | ||||||||
| Expr1014401 | |||||||||
| Expr1035553 | |||||||||
| Expr1159394 | |||||||||
| Expr2012563 | |||||||||
| Expr2030800 | |||||||||
| Drives_construct | WBCnstr00029908 | ||||||||
| Construct_product | WBCnstr00013984 | ||||||||
| WBCnstr00029908 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (90) | |||||||||
| Interaction (55) | |||||||||
| Map_info | Map | III | Position | 19.1628 | Error | 0.024664 | |||
| Positive | Positive_clone | Y37D8A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00024200 | ||||||||
| WBPaper00035925 | |||||||||
| WBPaper00038444 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
