WormBase Tree Display for Gene: WBGene00012209

WBGene00012209 SMap: S_parent: Sequence: W02D9
  Identity: Version: 2
    Name: CGC_name: hmg-20 Person_evidence: WBPerson260
      Sequence_name: W02D9.3
      Molecular_name: W02D9.3
        W02D9.3.1
        CE14458
      Other_name: CELE_W02D9.3 Accession_evidence: NDB BX284601
      Public_name: hmg-20
    DB_info: Database: AceView gene 1N129
        WormQTL gene WBGene00012209
        WormFlux gene WBGene00012209
        NDB locus_tag CELE_W02D9.3
        Panther gene CAEEL|WormBase=WBGene00012209|UniProtKB=Q9XVG8
          family PTHR46040
        NCBI gene 173124
        RefSeq protein NM_060777.7
        TREEFAM TREEFAM_ID TF106440
        TrEMBL UniProtAcc Q9XVG8
        UniProt_GCRP UniProtAcc Q9XVG8
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:53 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 22 Sep 2011 11:35:55 WBPerson2970 Name_change: CGC_name: hmg-20
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: hmg
    Allele (57)
    Strain: WBStrain00032825
      WBStrain00037267
      WBStrain00047516
      WBStrain00051982
    RNASeq_FPKM (74)
    GO_annotation: 00102434
      00102435
      00102436
      00102437
      00102438
      00102439
    Ortholog (38)
    Paralog: WBGene00001972 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00001973 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00001974 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00008081 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00022182 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable DNA binding activity. Predicted to be involved in regulation of gene expression. Predicted to be located in nucleus. Expressed in body wall musculature; head neurons; seam cell; ventral nerve cord; and vulval muscle. Is an ortholog of human HMG20A (high mobility group 20A). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: W02D9.3
    Corresponding_transcript: W02D9.3.1
    Other_sequence: CRC09085_1
      CJC02595_1
      CJC05763_1
      CR05350
    Associated_feature: WBsf643769
      WBsf985604
      WBsf985605
      WBsf985606
      WBsf1010913
      WBsf218611
      WBsf218612
    Transcription_factor: WBTranscriptionFactor001077
  Experimental_info: RNAi_result: WBRNAi00069479 Inferred_automatically: RNAi_primary
      WBRNAi00077914 Inferred_automatically: RNAi_primary
      WBRNAi00054609 Inferred_automatically: RNAi_primary
      WBRNAi00004381 Inferred_automatically: RNAi_primary
      WBRNAi00116990 Inferred_automatically: RNAi_primary
      WBRNAi00007644 Inferred_automatically: RNAi_primary
      WBRNAi00036197 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr7694
      Expr1022778
      Expr1035405
      Expr1158153
      Expr2012519
      Expr2030758
    Drives_construct: WBCnstr00012839
    Microarray_results (20)
    Expression_cluster (89)
    Interaction (18)
  Map_info: Map: I Position: 13.463 Error: 0.031959
    Positive: Positive_clone: W02D9 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00048917
    WBPaper00055090
    WBPaper00061738
    WBPaper00064339
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene