WormBase Tree Display for Gene: WBGene00001972
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WBGene00001972 | SMap | S_parent | Sequence | F47D12 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | hmg-1.2 | |||||||
Sequence_name | F47D12.4 | ||||||||
Molecular_name | F47D12.4a | ||||||||
F47D12.4a.1 | |||||||||
CE26923 | |||||||||
F47D12.4b | |||||||||
CE28233 | |||||||||
F47D12.4c | |||||||||
CE28234 | |||||||||
F47D12.4b.1 | |||||||||
F47D12.4c.1 | |||||||||
Other_name | son-1 | CGC_data_submission | |||||||
CELE_F47D12.4 | Accession_evidence | NDB | BX284603 | ||||||
Public_name | hmg-1.2 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | hmg | ||||||||
Allele (28) | |||||||||
Strain | WBStrain00001623 | ||||||||
WBStrain00030872 | |||||||||
WBStrain00030873 | |||||||||
WBStrain00030879 | |||||||||
WBStrain00036586 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (14) | |||||||||
Ortholog (61) | |||||||||
Paralog | WBGene00001973 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
WBGene00001974 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00008081 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00012209 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00022182 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Automated_description | Enables transcription cis-regulatory region binding activity. Involved in several processes, including gonad development; positive regulation of transcription by RNA polymerase II; and vulval development. Located in nucleus. Expressed in several structures, including tail. Human ortholog(s) of this gene implicated in several diseases, including Kawasaki disease; cerebral infarction; and syndromic microphthalmia 13. Is an ortholog of human HMGB3 (high mobility group box 3). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:6000 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4983) | ||||
DOID:332 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4983) | ||||||
DOID:0111811 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:5004) | ||||||
DOID:3526 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4983) | ||||||
DOID:13378 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4983) | ||||||
DOID:418 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4983) | ||||||
Molecular_info | Corresponding_CDS | F47D12.4a | |||||||
F47D12.4b | |||||||||
F47D12.4c | |||||||||
Corresponding_transcript | F47D12.4a.1 | ||||||||
F47D12.4b.1 | |||||||||
F47D12.4c.1 | |||||||||
Other_sequence (117) | |||||||||
Associated_feature (13) | |||||||||
Transcription_factor | WBTranscriptionFactor000385 | ||||||||
Experimental_info | RNAi_result (45) | ||||||||
Expr_pattern (12) | |||||||||
Drives_construct | WBCnstr00002462 | ||||||||
WBCnstr00002481 | |||||||||
WBCnstr00003263 | |||||||||
WBCnstr00012419 | |||||||||
WBCnstr00015261 | |||||||||
WBCnstr00017071 | |||||||||
WBCnstr00019876 | |||||||||
WBCnstr00036551 | |||||||||
Construct_product | WBCnstr00012419 | ||||||||
WBCnstr00019997 | |||||||||
WBCnstr00019999 | |||||||||
WBCnstr00036551 | |||||||||
Microarray_results (34) | |||||||||
Expression_cluster (166) | |||||||||
Interaction (312) | |||||||||
WBProcess | WBbiopr:00000071 | ||||||||
WBbiopr:00000072 | |||||||||
Map_info | Map | III | Position | -1.40577 | Error | 0.000741 | |||
Positive | Positive_clone | F47D12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 4334 | |||||||
4407 | |||||||||
Pseudo_map_position | |||||||||
Reference (13) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |