WormBase Tree Display for Gene: WBGene00012118
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WBGene00012118 | SMap | S_parent | Sequence | T28C6 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | grsp-2 | Person_evidence | WBPerson168 | |||||
Sequence_name | T28C6.1 | ||||||||
Molecular_name (27) | |||||||||
Other_name | CELE_T28C6.1 | Accession_evidence | NDB | BX284604 | |||||
Public_name | grsp-2 | ||||||||
DB_info | Database | AceView | gene | 4J583 | |||||
WormQTL | gene | WBGene00012118 | |||||||
WormFlux | gene | WBGene00012118 | |||||||
NDB | locus_tag | CELE_T28C6.1 | |||||||
NCBI | gene | 177693 | |||||||
RefSeq | protein | NM_001268403.3 | |||||||
NM_001268408.3 | |||||||||
NM_001307124.3 | |||||||||
NM_001372891.3 | |||||||||
NM_001268406.4 | |||||||||
NM_001268404.3 | |||||||||
NM_001268405.4 | |||||||||
NM_001268407.3 | |||||||||
NM_001372890.2 | |||||||||
TrEMBL | UniProtAcc | A0A486WTM4 | |||||||
X5LX98 | |||||||||
C6KRI7 | |||||||||
H2FLG9 | |||||||||
H2L275 | |||||||||
Q22843 | |||||||||
H2L276 | |||||||||
A0A486WX17 | |||||||||
C6KRI8 | |||||||||
UniProt_GCRP | UniProtAcc | H2FLG9 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 28 Jul 2005 14:15:27 | WBPerson2970 | Name_change | CGC_name | grsp-2 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | grsp | ||||||||
Allele (45) | |||||||||
Strain | WBStrain00031935 | ||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog | WBGene00042260 | Caenorhabditis briggsae | From_analysis | OMA | |||||
WBGene00061421 | Caenorhabditis remanei | From_analysis | OMA | ||||||
WBGene00089956 | Pristionchus pacificus | From_analysis | OMA | ||||||
WBGene00162015 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
chrIV_pilon.g11170 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | grsp-2 encodes a glycine-rich protein, predicted to be secreted; grsp-2 transcript levels are up-regulated in response to infection with the fungus Drechmeria coniospora. | Paper_evidence | WBPaper00032031 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 02 Apr 2013 00:00:00 | ||||||||
Automated_description | Enriched in several structures, including ABalaappppa; ABalapaappa; PVT; rect_D; and rectal epithelial cell based on single-cell RNA-seq and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; proteomic; and RNA-seq studies. Is affected by eleven chemicals including Psoralens; allantoin; and Sirolimus based on RNA-seq; proteomic; and microarray studies. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | T28C6.1a | |||||||
T28C6.1b | |||||||||
T28C6.1c | |||||||||
T28C6.1d | |||||||||
T28C6.1e | |||||||||
T28C6.1f | |||||||||
T28C6.1g | |||||||||
T28C6.1h | |||||||||
T28C6.1i | |||||||||
Corresponding_CDS_history | T28C6.1:wp109 | ||||||||
Corresponding_transcript | T28C6.1a.1 | ||||||||
T28C6.1b.1 | |||||||||
T28C6.1c.1 | |||||||||
T28C6.1d.1 | |||||||||
T28C6.1e.1 | |||||||||
T28C6.1f.1 | |||||||||
T28C6.1g.1 | |||||||||
T28C6.1h.1 | |||||||||
T28C6.1i.1 | |||||||||
Other_sequence (11) | |||||||||
Associated_feature (11) | |||||||||
Experimental_info | RNAi_result | WBRNAi00070848 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00054394 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00036075 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00019387 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00019388 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00070849 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1015011 | ||||||||
Expr1035355 | |||||||||
Expr1157941 | |||||||||
Expr2012279 | |||||||||
Expr2030515 | |||||||||
Drives_construct | WBCnstr00030126 | ||||||||
Construct_product | WBCnstr00030126 | ||||||||
Microarray_results (34) | |||||||||
Expression_cluster (184) | |||||||||
Interaction | WBInteraction000543651 | ||||||||
WBInteraction000543786 | |||||||||
WBInteraction000563912 | |||||||||
WBInteraction000585296 | |||||||||
Map_info | Map | IV | Position | 3.97125 | Error | 0.002579 | |||
Positive | Positive_clone | T28C6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 5357 | |||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00032031 | ||||||||
WBPaper00062388 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |