WormBase Tree Display for Gene: WBGene00011994

WBGene00011994 SMap: S_parent: Sequence: T24F1
  Identity: Version: 2
    Name: CGC_name: samp-1 Person_evidence: WBPerson622
      Sequence_name: T24F1.2
      Molecular_name: T24F1.2
        T24F1.2.1
        CE02362
      Other_name: CELE_T24F1.2 Accession_evidence: NDB BX284602
      Public_name: samp-1
    DB_info: Database: AceView gene 2L595
        WormQTL gene WBGene00011994
        WormFlux gene WBGene00011994
        NDB locus_tag CELE_T24F1.2
        Panther gene CAEEL|WormBase=WBGene00011994|UniProtKB=Q22747
          family PTHR28646
        NCBI gene 174727
        RefSeq protein NM_064015.7
        SwissProt UniProtAcc Q22747
        TREEFAM TREEFAM_ID TF106107
        UniProt_GCRP UniProtAcc Q22747
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:53 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 12 Apr 2013 17:02:05 WBPerson2970 Name_change: CGC_name: samp-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: samp
    Allele (55)
    Strain: WBStrain00037111
    RNASeq_FPKM (74)
    GO_annotation: 00076279
      00076280
      00076281
      00076282
      00076283
      00076284
      00076285
      00076286
      00076287
      00076288
    Contained_in_operon: CEOP2528
    Ortholog (32)
    Structured_description: Concise_description: samp-1 encodes an ortholog of mammalian NET5/Samp1 and Schizosaccharomyces pombe Ima1, integral membrane proteins of the inner nuclear envelope; loss of samp-1 activity indicates that SAMP-1 is essential for embryonic development and plays a minor role in hyp7 nuclear migrations during embryonic development; SAMP-1 localizes to the nuclear envelope. Paper_evidence: WBPaper00045548
          Curator_confirmed: WBPerson1843
            WBPerson324
          Date_last_updated: 27 Oct 2014 00:00:00
      Automated_description: Predicted to enable actin filament binding activity and lamin binding activity. Involved in embryo development and nuclear migration along microtubule. Located in nuclear envelope. Is an ortholog of human TMEM201 (transmembrane protein 201). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T24F1.2
    Corresponding_transcript: T24F1.2.1
    Other_sequence: CRC01634_1
      CR00303
      CBC02713_1
    Associated_feature (12)
  Experimental_info: RNAi_result: WBRNAi00054073 Inferred_automatically: RNAi_primary
      WBRNAi00035932 Inferred_automatically: RNAi_primary
      WBRNAi00061895 Inferred_automatically: RNAi_primary
      WBRNAi00019168 Inferred_automatically: RNAi_primary
      WBRNAi00073293 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr3667
      Expr11905
      Expr1017215
      Expr1035301
      Expr1157617
      Expr2015585
      Expr2033820
    Drives_construct: WBCnstr00030216
    Construct_product: WBCnstr00011585
      WBCnstr00030216
    Antibody: WBAntibody00002544
    Microarray_results (18)
    Expression_cluster (93)
    SAGE_tag (21)
    Interaction (44)
  Map_info: Map: II Position: 3.40795
    Positive: Positive_clone: T24F1 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00026722
    WBPaper00038491
    WBPaper00043397
    WBPaper00045548
    WBPaper00047288
    WBPaper00055090
    WBPaper00063084
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene