WormBase Tree Display for Gene: WBGene00011557
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WBGene00011557 | SMap | S_parent | Sequence | T07A5 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0000336 | |||||
Allele | WBVar01500260 | ||||||
WBVar02152541 | |||||||
WBVar01499774 | |||||||
WBVar01447977 | |||||||
WBVar01447978 | |||||||
WBVar02156406 | |||||||
WBVar00407071 | |||||||
WBVar00855630 | |||||||
WBVar00855631 | |||||||
RNASeq_FPKM (74) | |||||||
Ortholog | WBGene00164957 | Caenorhabditis brenneri | From_analysis | TreeFam | |||
WBGene00158585 | Caenorhabditis brenneri | From_analysis | TreeFam | ||||
WBGene00136173 | Caenorhabditis japonica | From_analysis | TreeFam | ||||
WBGene00119522 | Caenorhabditis japonica | From_analysis | TreeFam | ||||
WBGene00079127 | Caenorhabditis remanei | From_analysis | TreeFam | ||||
WBGene00074688 | Caenorhabditis remanei | From_analysis | TreeFam | ||||
WBGene00080435 | Caenorhabditis remanei | From_analysis | TreeFam | ||||
WBGene00068392 | Caenorhabditis remanei | From_analysis | TreeFam | ||||
Paralog | WBGene00018145 | Caenorhabditis elegans | From_analysis | Panther | |||
WBGene00022847 | Caenorhabditis elegans | From_analysis | Panther | ||||
WBGene00016877 | Caenorhabditis elegans | From_analysis | Panther | ||||
WBGene00022848 | Caenorhabditis elegans | From_analysis | Panther | ||||
Structured_description | Automated_description | Is affected by several genes including eat-2; alg-1; and csr-1 based on RNA-seq studies. Is affected by multi-walled carbon nanotube and bortezomib based on RNA-seq studies. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info (3) | |||||||
Experimental_info | Expr_pattern | Expr1023549 | |||||
Expr1035092 | |||||||
Expr1156302 | |||||||
Drives_construct | WBCnstr00030563 | ||||||
Construct_product | WBCnstr00030563 | ||||||
Microarray_results | A_12_P105708 | ||||||
GPL13394_WBGene00011557 | |||||||
GPL13914_T07A5.4 | |||||||
GPL14144_T07A5.4_555-614_0.966_1_A | |||||||
GPL19516_CGZ0033841 | |||||||
GPL21109_T07A5.4 | |||||||
GPL8304_CE_WBGene00011557_A | |||||||
GPL8673_T07A5_4P00072 | |||||||
GPL8673_T07A5_4P00359 | |||||||
GPL8673_T07A5_4P00460 | |||||||
Expression_cluster (29) | |||||||
Map_info | Map | III | Position | 2.26873 | Error | 0.008734 | |
Positive | Positive_clone | T07A5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
ostf-4 was incorrectly assigned to this locus back in 2007 instead of T07A5.5 which is the C. elegans ortholog. | Curator_confirmed | WBPerson1983 | |||||
Method | Gene |