WormBase Tree Display for Gene: WBGene00010934

WBGene00010934 SMap: S_parent: Sequence: M162
  Identity: Version: 2
    Name: CGC_name: fbxa-118 Person_evidence: WBPerson655
      Sequence_name: M162.8
      Molecular_name: M162.8
        M162.8.1
        CE39266
      Other_name: CELE_M162.8 Accession_evidence: NDB BX284605
      Public_name: fbxa-118
    DB_info: Database: AceView gene 5U240
        WormQTL gene WBGene00010934
        WormFlux gene WBGene00010934
        NDB locus_tag CELE_M162.8
        Panther gene CAEEL|WormBase=WBGene00010934|UniProtKB=Q9XUD2
          family PTHR23015
        NCBI gene 187491
        RefSeq protein NM_075431.4
        TREEFAM TREEFAM_ID TF322006
        TrEMBL UniProtAcc Q9XUD2
        UniProt_GCRP UniProtAcc Q9XUD2
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:52 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 12 Dec 2005 15:18:56 WBPerson2970 Name_change: CGC_name: fbxa-118
      Split_into: WBGene00044655
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: fbxa
    Allele (35)
    RNASeq_FPKM (74)
    Ortholog (14)
    Paralog (224)
    Structured_description: Concise_description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. Paper_evidence: WBPaper00012854
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Enriched in AVDL; AVDR; head mesodermal cell; and hypodermis based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and daf-12 based on microarray and RNA-seq studies. Is affected by five chemicals including Mercuric Chloride; multi-walled carbon nanotube; and Zidovudine based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: F-box-like domain superfamily; FTH domain; F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; and F-box A protein FB224. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: M162.8
    Corresponding_CDS_history: M162.8:wp150
    Corresponding_transcript: M162.8.1
  Experimental_info: RNAi_result: WBRNAi00050986 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1022541
      Expr1154690
      Expr2011463
      Expr2029701
    Drives_construct: WBCnstr00031046
    Construct_product: WBCnstr00031046
    Microarray_results (18)
    Expression_cluster (97)
    Interaction (46)
  Map_info: Map: V Position: 23.3159 Error: 0.020729
    Positive: Positive_clone: M162 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00012854
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene