WormBase Tree Display for Gene: WBGene00010734
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| WBGene00010734 | SMap | S_parent | Sequence | K10C8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | parn-1 | Person_evidence | WBPerson150 | |||||
| Sequence_name | K10C8.1 | ||||||||
| Molecular_name | K10C8.1 | ||||||||
| K10C8.1.1 | |||||||||
| CE39514 | |||||||||
| Other_name | CELE_K10C8.1 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | parn-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 21 May 2013 15:54:27 | WBPerson2970 | Name_change | CGC_name | parn-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | parn | ||||||||
| Allele (47) | |||||||||
| Strain | WBStrain00032315 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (24) | |||||||||
| Ortholog (33) | |||||||||
| Paralog | WBGene00013265 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | parn-1 encodes a deadenylase orthologous to members of the PARN (Poly(A)-specific ribonuclease) family of nucleases; by homology, PARN-1 is predicted to catalyze mRNA poly(A) tail degradation in the 3'- to 5'-direction. | Paper_evidence | WBPaper00043886 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 23 Oct 2013 00:00:00 | ||||||||
| Automated_description | Enables 3'-5'-RNA exonuclease activity. Involved in RNA metabolic process and reproduction. Located in P granule. Human ortholog(s) of this gene implicated in autosomal recessive dyskeratosis congenita 6 and spermatogenic failure 57. Is an ortholog of human PNLDC1 (PARN like ribonuclease domain containing exonuclease 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0070024 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:8609) | ||||
| EFO:MONDO:0000148 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:8609) | ||||||
| DOID:0112338 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:21185) | ||||||
| Molecular_info | Corresponding_CDS | K10C8.1 | |||||||
| Corresponding_CDS_history | K10C8.1:wp152 | ||||||||
| Corresponding_transcript | K10C8.1.1 | ||||||||
| Other_sequence | CR04974 | ||||||||
| CRC04981_1 | |||||||||
| CBC08607_1 | |||||||||
| CRC08527_1 | |||||||||
| CR06118 | |||||||||
| CR05684 | |||||||||
| Associated_feature | WBsf234711 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00050503 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00016963 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00078333 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00034246 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00061852 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr12762 | ||||||||
| Expr12763 | |||||||||
| Expr1020712 | |||||||||
| Expr1034700 | |||||||||
| Expr1154214 | |||||||||
| Expr2014734 | |||||||||
| Expr2032968 | |||||||||
| Drives_construct | WBCnstr00022795 | ||||||||
| WBCnstr00031186 | |||||||||
| Construct_product | WBCnstr00022795 | ||||||||
| WBCnstr00031186 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (86) | |||||||||
| Interaction (19) | |||||||||
| Map_info | Map | V | Position | 4.61316 | |||||
| Positive | Positive_clone | K10C8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (11) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
