WormBase Tree Display for Gene: WBGene00010639
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| WBGene00010639 | SMap | S_parent | Sequence | K07F5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | Sequence_name | K07F5.15 | |||||||
| Molecular_name | K07F5.15 | ||||||||
| K07F5.15.1 | |||||||||
| CE47722 | |||||||||
| K07F5.15.2 | |||||||||
| K07F5.15.3 | |||||||||
| Other_name | CELE_K07F5.15 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | K07F5.15 | ||||||||
| DB_info | Database | AceView | gene | 4K631 | |||||
| WormQTL | gene | WBGene00010639 | |||||||
| WormFlux | gene | WBGene00010639 | |||||||
| NDB | locus_tag | CELE_K07F5.15 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00010639|UniProtKB=I7J4C6 | |||||||
| family | PTHR16967 | ||||||||
| NCBI | gene | 36805026 | |||||||
| RefSeq | protein | NM_001383172.2 | |||||||
| TREEFAM | TREEFAM_ID | TF300138 | |||||||
| TrEMBL | UniProtAcc | I7J4C6 | |||||||
| UniProt_GCRP | UniProtAcc | I7J4C6 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 06 Mar 2018 14:40:18 | WBPerson4025 | Event | Split_into | WBGene00303023 | ||||
| Split_into | WBGene00303023 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (19) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Contained_in_operon | CEOP4340 | ||||||||
| CEOP5624 | |||||||||
| Ortholog | WBGene00193830 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | |||||
| WBGene00162433 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||||
| WBGene00087811 | Caenorhabditis briggsae | From_analysis | Inparanoid_8 | ||||||
| WBGene00212414 | Caenorhabditis japonica | From_analysis | Inparanoid_8 | ||||||
| WBGene00084141 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||||
| ZFIN:ZDB-GENE-060331-129 | Danio rerio | From_analysis | EnsEMBL-Compara | ||||||
| Panther | |||||||||
| HGNC:24991 | Homo sapiens | From_analysis | EnsEMBL-Compara | ||||||
| Panther | |||||||||
| MGI:1289231 | Mus musculus | From_analysis | EnsEMBL-Compara | ||||||
| Panther | |||||||||
| RGD:735128 | Rattus norvegicus | From_analysis | EnsEMBL-Compara | ||||||
| Panther | |||||||||
| Structured_description | Concise_description | The K07F5.15 gene encodes a small protein that is of ancient origin, and thus is presumably important to eukaryotic life; it is homologous to YNL024C-A (also known as NNL005C) in S. cerevisiae, and has homologs in Drosophila, mammals, and Neurospora, most of which are also small (<100-residue) proteins. | Paper_evidence | WBPaper00013119 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enriched in several structures, including NSM; coelomocyte; germ line; sensory neurons; and somatic gonad precursor based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including skn-1; hsf-1; and clk-1 based on microarray; RNA-seq; and proteomic studies. Is affected by eight chemicals including rotenone; Rifampin; and Sirolimus based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Protein of unknown function (DUF2462) and Uncharacterised protein family UPF0390. Is an ortholog of human C19orf53 (chromosome 19 open reading frame 53). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | K07F5.15 | |||||||
| Corresponding_CDS_history | K07F5.15a:wp264 | ||||||||
| K07F5.15b:wp264 | |||||||||
| Corresponding_transcript | K07F5.15.1 | ||||||||
| K07F5.15.2 | |||||||||
| K07F5.15.3 | |||||||||
| Other_sequence (59) | |||||||||
| Associated_feature | WBsf660536 | ||||||||
| WBsf997490 | |||||||||
| WBsf1018010 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00106348 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00050186 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9413 | ||||||||
| Expr1015609 | |||||||||
| Expr1034649 | |||||||||
| Expr1153880 | |||||||||
| Expr2004869 | |||||||||
| Expr2023090 | |||||||||
| Construct_product | WBCnstr00013978 | ||||||||
| Microarray_results (27) | |||||||||
| Expression_cluster (97) | |||||||||
| Interaction | WBInteraction000541984 | ||||||||
| Map_info | Positive | Positive_clone | K07F5 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | IV | 4.43552 | |||||||
| Reference | WBPaper00038444 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Method | Gene |
