WormBase Tree Display for Gene: WBGene00010587
expand all nodes | collapse all nodes | view schema
WBGene00010587 | SMap | S_parent | Sequence | K05C4 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | sol-2 | Paper_evidence | WBPaper00041519 | |||||
Person_evidence | WBPerson404 | ||||||||
Sequence_name | K05C4.11 | ||||||||
Molecular_name | K05C4.11 | ||||||||
K05C4.11.1 | |||||||||
CE19979 | |||||||||
K05C4.11.2 | |||||||||
Other_name | CELE_K05C4.11 | Accession_evidence | NDB | BX284601 | |||||
Public_name | sol-2 | ||||||||
DB_info | Database | AceView | gene | 1P314 | |||||
WormQTL | gene | WBGene00010587 | |||||||
WormFlux | gene | WBGene00010587 | |||||||
NDB | locus_tag | CELE_K05C4.11 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00010587|UniProtKB=Q9XUU2 | |||||||
family | PTHR45645 | ||||||||
NCBI | gene | 173336 | |||||||
RefSeq | protein | NM_061159.6 | |||||||
TREEFAM | TREEFAM_ID | TF318542 | |||||||
TrEMBL | UniProtAcc | Q9XUU2 | |||||||
UniProt_GCRP | UniProtAcc | Q9XUU2 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 28 Sep 2012 14:29:00 | WBPerson2970 | Name_change | CGC_name | sol-2 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | sol | ||||||||
Allele (99) | |||||||||
Strain | WBStrain00036455 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (12) | |||||||||
Ortholog (20) | |||||||||
Paralog (48) | |||||||||
Structured_description | Concise_description | sol-2 encodes a CUB and LDLa domain-containing type I transmembrane protein homologous to the vertebrate Neto proteins; SOL-2 functions as an auxiliary protein that positively regulates activity of the AMPA-subtype ionotropic glutamate receptor, GLR-1, and thus regulates glutamate-mediated synaptic transmission and behavior; a sol-2::GFP promoter fusion is expressed in head and tail neurons, including command interneurons and neurons that also express GLR-1 and SOL-1. | Paper_evidence | WBPaper00041519 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 13 Oct 2012 00:00:00 | ||||||||
Automated_description | Enables channel regulator activity. Involved in several processes, including hyperosmotic response; positive regulation of glutamatergic synaptic transmission; and thigmotaxis. Located in neuron projection membrane. Part of ionotropic glutamate receptor complex. Expressed in command interneuron; head neurons; and tail neurons. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | K05C4.11 | |||||||
Corresponding_transcript | K05C4.11.1 | ||||||||
K05C4.11.2 | |||||||||
Other_sequence | Dviv_isotig28068 | ||||||||
JI170916.1 | |||||||||
CJC16811_1 | |||||||||
Associated_feature | WBsf665153 | ||||||||
WBsf986215 | |||||||||
WBsf986216 | |||||||||
WBsf986217 | |||||||||
WBsf1011284 | |||||||||
WBsf220647 | |||||||||
WBsf220648 | |||||||||
Experimental_info (7) | |||||||||
Map_info | Map | I | Position | 26.4855 | |||||
Positive | Positive_clone | K05C4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00041519 | ||||||||
WBPaper00055090 | |||||||||
WBPaper00062388 | |||||||||
WBPaper00064190 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |