WormBase Tree Display for Gene: WBGene00010340
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WBGene00010340 | SMap | S_parent | Sequence | CHROMOSOME_X | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | slcf-1 | Person_evidence | WBPerson605 | |||
Sequence_name | F59F5.1 | ||||||
Molecular_name | F59F5.1 | ||||||
F59F5.1.1 | |||||||
CE41326 | |||||||
Other_name | CELE_F59F5.1 | Accession_evidence | NDB | BX284606 | |||
Public_name | slcf-1 | ||||||
DB_info | Database | AceView | gene | XL147 | |||
WormQTL | gene | WBGene00010340 | |||||
WormFlux | gene | WBGene00010340 | |||||
NDB | locus_tag | CELE_F59F5.1 | |||||
Panther | gene | CAEEL|WormBase=WBGene00010340|UniProtKB=G5ECR3 | |||||
family | PTHR11360 | ||||||
NCBI | gene | 186633 | |||||
RefSeq | protein | NM_077361.5 | |||||
TrEMBL | UniProtAcc | G5ECR3 | |||||
UniProt_GCRP | UniProtAcc | G5ECR3 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | slcf | ||||||
Allele (63) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00012371 | ||||||
00012372 | |||||||
00012373 | |||||||
00012374 | |||||||
00012375 | |||||||
00117775 | |||||||
00117776 | |||||||
Ortholog (28) | |||||||
Paralog | WBGene00003986 | Caenorhabditis elegans | From_analysis | TreeFam | |||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00008214 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00020168 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00015676 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00010834 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00015273 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00021227 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
WormBase-Compara | |||||||
WBGene00013353 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00017369 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
Structured_description | Concise_description | slcf-1 encodes a plasma membrane transporter that is a member of the conserved monocarboxylate transporter family; loss of SLCF-1 function results in altered mitochondrial metabolism, reactive oxygen species accumulation, and increased lifespan that mimics dietary restriction; an SLCF-1::GFP reporter fusion is expressed in intestinal cells during embryonic, larval and adult stages and localizes to the basolateral plasma membrane. | Paper_evidence | WBPaper00037741 | |||
WBPaper00041028 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 15 May 2014 00:00:00 | ||||||
Automated_description | Predicted to enable monocarboxylic acid transmembrane transporter activity. Predicted to be involved in monocarboxylic acid transport. Located in basolateral plasma membrane. Expressed in intestine. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F59F5.1 | |||||
Corresponding_CDS_history | F59F5.1:wp178 | ||||||
Corresponding_transcript | F59F5.1.1 | ||||||
Other_sequence | JI221829.1 | ||||||
HBC09062_1 | |||||||
EX828307.1 | |||||||
Acan_isotig19085 | |||||||
ACC04198_1 | |||||||
Acan_isotig13148 | |||||||
ES743270.1 | |||||||
Associated_feature | WBsf648482 | ||||||
Experimental_info | RNAi_result (25) | ||||||
Expr_pattern | Expr9155 | ||||||
Expr1013235 | |||||||
Expr1152966 | |||||||
Expr2015879 | |||||||
Expr2034112 | |||||||
Drives_construct | WBCnstr00013752 | ||||||
WBCnstr00014891 | |||||||
WBCnstr00031488 | |||||||
Construct_product | WBCnstr00013752 | ||||||
WBCnstr00031488 | |||||||
Microarray_results (19) | |||||||
Expression_cluster (85) | |||||||
Interaction (14) | |||||||
Map_info | Map | X | Position | 2.22549 | Error | 0.000129 | |
Positive | Positive_clone | F59F5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00031805 | ||||||
WBPaper00037741 | |||||||
WBPaper00045256 | |||||||
WBPaper00045338 | |||||||
WBPaper00046800 | |||||||
WBPaper00047404 | |||||||
WBPaper00062255 | |||||||
WBPaper00064057 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |