WormBase Tree Display for Gene: WBGene00010158

WBGene00010158 SMap: S_parent: Sequence: F56G4
  Identity: Version: 2
    Name: CGC_name: pes-2.2 From_analysis: Inferred_from_orthology
      Sequence_name: F56G4.3
      Molecular_name: F56G4.3
        F56G4.3.1
        CE18757
      Other_name: pes-2 Accession_evidence: EMBL X94701
              X94702
        CELE_F56G4.3 Accession_evidence: NDB BX284601
      Public_name: pes-2.2
    DB_info: Database: AceView gene 1L950
        WormFlux gene WBGene00010158
        NDB locus_tag CELE_F56G4.3
        NCBI gene 173026
        RefSeq protein NM_060509.5
        TREEFAM TREEFAM_ID TF319902
        TrEMBL UniProtAcc G5ECQ5
        UniProt_GCRP UniProtAcc G5ECQ5
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:51 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 09 Nov 2007 11:13:44 WBPerson2970 Name_change: CGC_name: pes-2.2
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pes
    Allele (11)
    RNASeq_FPKM (74)
    Ortholog (17)
    Paralog (43)
    Structured_description: Concise_description: pes-2.2 encodes a protein that contains a predicted signal sequence, cyclin-like F box, and an F box-associated C-terminal domain; PES-2.2 is identical to PES-2 and by homology, is predicted to function in ubiquitin-mediated protein degradation. Curator_confirmed: WBPerson1843
          Date_last_updated: 02 Jun 2015 00:00:00
      Automated_description: Enriched in PVR; RIML; and RIMR based on single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; RNA-seq; and proteomic studies. Is affected by six chemicals including mianserin; Psoralens; and allantoin based on RNA-seq studies. Is predicted to encode a protein with the following domains: F-box associated and F-box associated domain, type 2. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F56G4.3
    Corresponding_transcript: F56G4.3.1
    Other_sequence: CRC12120_1
      CR04500
      CRC00209_1
    Associated_feature: WBsf985273
      WBsf985274
      WBsf985275
      WBsf1010706
      WBsf1010707
      WBsf1010708
      WBsf220330
  Experimental_info: RNAi_result: WBRNAi00063223 Inferred_automatically: RNAi_primary
      WBRNAi00003819 Inferred_automatically: RNAi_primary
      WBRNAi00076492 Inferred_automatically: RNAi_primary
      WBRNAi00003818 Inferred_automatically: RNAi_primary
      WBRNAi00063224 Inferred_automatically: RNAi_primary
      WBRNAi00048761 Inferred_automatically: RNAi_primary
      WBRNAi00007548 Inferred_automatically: RNAi_primary
      WBRNAi00048762 Inferred_automatically: RNAi_primary
      WBRNAi00007564 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1152509
      Expr2014833
      Expr2033068
    Microarray_results: SMD_F56G4.3
      Aff_F56G4.2
    Expression_cluster (74)
    Interaction (152)
  Map_info: Map: I Position: 7.95285
    Positive: Positive_clone: F56G4 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00012854
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene