WormBase Tree Display for Gene: WBGene00009972
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| WBGene00009972 | SMap | S_parent | Sequence | F53C11 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | ||||||||
| Name | CGC_name | oac-33 | Person_evidence | WBPerson567 | ||||||
| Sequence_name | F53C11.2 | |||||||||
| Molecular_name | F53C11.2 | |||||||||
| Other_name | CELE_F53C11.2 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | oac-33 | |||||||||
| DB_info | Database | AceView | gene | 5O256 | ||||||
| WormQTL | gene | WBGene00009972 | ||||||||
| NDB | locus_tag | CELE_F53C11.2 | ||||||||
| NCBI | gene | 186165 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | |||
| 2 | 18 Jul 2008 14:49:34 | WBPerson2970 | Name_change | CGC_name | oac-33 | |||||
| 3 | 20 Jul 2011 13:42:00 | WBPerson4025 | Event | Changed_class | CDS | Pseudogene | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Gene_class | oac | |||||||||
| Allele (54) | ||||||||||
| RNASeq_FPKM (74) | ||||||||||
| Ortholog | WBGene00025146 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
| WBGene00027560 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||||||
| WBGene00028840 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||||||
| WBGene00029418 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||||||
| WBGene00032558 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||||||
| WBGene00032595 | Caenorhabditis briggsae | From_analysis | Hillier-set | |||||||
| OrthoMCL | ||||||||||
| OMA | ||||||||||
| WBGene00035995 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||||||
| WBGene00042523 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||||||
| WBGene00052876 | Caenorhabditis remanei | From_analysis | OMA | |||||||
| Structured_description | Automated_description | Enriched in muscle cell based on microarray studies. Is affected by several genes including eat-2; pgl-1; and nhr-49 based on RNA-seq and microarray studies. Is affected by five chemicals including 1-methylnicotinamide; Psoralens; and allantoin based on RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | F53C11.2:wp90 | ||||||||
| F53C11.2:wp154 | ||||||||||
| F53C11.2:wp221 | ||||||||||
| F53C11.2:wp227 | ||||||||||
| Corresponding_pseudogene | F53C11.2 | |||||||||
| Experimental_info | Expr_pattern | Expr1014338 | ||||||||
| Microarray_results (16) | ||||||||||
| Expression_cluster (44) | ||||||||||
| Interaction (11) | ||||||||||
| Map_info | Map | V | Position | 5.58722 | Error | 0.000174 | ||||
| Positive | Positive_clone | F53C11 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Pseudo_map_position | ||||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
