WormBase Tree Display for Gene: WBGene00009968
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WBGene00009968 | SMap | S_parent | Sequence | CHROMOSOME_V | |||
---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||
Name | CGC_name | fig-1 | Person_evidence | WBPerson3410 | |||
WBPerson3085 | |||||||
WBPerson576 | |||||||
Sequence_name | F53B7.5 | ||||||
Molecular_name | F53B7.5a | ||||||
F53B7.5a.1 | |||||||
CE47474 | |||||||
F53B7.5b | |||||||
CE53054 | |||||||
F53B7.5b.1 | |||||||
Other_name | CELE_F53B7.5 | Accession_evidence | NDB | BX284605 | |||
Public_name | fig-1 | ||||||
DB_info | Database | AceView | gene | 5L452 | |||
WormQTL | gene | WBGene00009968 | |||||
WormFlux | gene | WBGene00009968 | |||||
NDB | locus_tag | CELE_F53B7.5 | |||||
Panther | gene | CAEEL|WormBase=WBGene00009968|UniProtKB=G5EGB4 | |||||
family | PTHR31507 | ||||||
NCBI | gene | 179523 | |||||
RefSeq | protein | NM_001129475.3 | |||||
NM_001129474.4 | |||||||
TREEFAM | TREEFAM_ID | TF315483 | |||||
TrEMBL | UniProtAcc | G5EGB4 | |||||
H9G2W3 | |||||||
UniProt_GCRP | UniProtAcc | G5EGB4 | |||||
Species | Caenorhabditis elegans | ||||||
History (2) | |||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | fig | ||||||
Allele (157) | |||||||
Possibly_affected_by | WBVar02157904 | ||||||
Strain | WBStrain00052693 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00019912 | ||||||
Ortholog (32) | |||||||
Paralog (18) | |||||||
Structured_description | Concise_description | fig-1 encodes a predicted extracellular protein containing conserved thrombospondin TSP1 domains; FIG-1 function is required cell nonautonomously for sensory organ function as measured by dye filling and behavioral assays; a fig-1::GFP promoter fusion is expressed in amphid and phasmid sheath glial cells from late embryogenesis through adulthood; as fig-1(RNAi) can produce defects at all stages of development and fig-1 mRNA is highly expressed, FIG-1 is likely to be a labile protein that plays a nonstructural role in regulating neuronal function. | Paper_evidence | WBPaper00032317 | |||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 08 Dec 2009 00:00:00 | ||||||
Automated_description | Predicted to be located in membrane. Expressed in amphid sheath cell and phasmid sheath cell. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F53B7.5a | |||||
F53B7.5b | |||||||
Corresponding_CDS_history | F53B7.5:wp173 | ||||||
F53B7.5a:wp230 | |||||||
F53B7.5b:wp270 | |||||||
Corresponding_transcript | F53B7.5a.1 | ||||||
F53B7.5b.1 | |||||||
Other_sequence | ACC12564_1 | ||||||
SS03471 | |||||||
Oden_isotig17409 | |||||||
Acan_isotig04140 | |||||||
EX536206.1 | |||||||
Associated_feature | WBsf668676 | ||||||
WBsf669348 | |||||||
WBsf1001240 | |||||||
WBsf1001241 | |||||||
WBsf1020387 | |||||||
WBsf234477 | |||||||
WBsf234478 | |||||||
Experimental_info | RNAi_result | WBRNAi00091964 | Inferred_automatically | RNAi_primary | |||
WBRNAi00048098 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00015486 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr12749 | ||||||
Expr1016241 | |||||||
Expr1034342 | |||||||
Expr1151908 | |||||||
Expr2011759 | |||||||
Expr2029997 | |||||||
Drives_construct (7) | |||||||
Construct_product | WBCnstr00005414 | ||||||
WBCnstr00007446 | |||||||
WBCnstr00007447 | |||||||
WBCnstr00007448 | |||||||
WBCnstr00031777 | |||||||
Microarray_results (19) | |||||||
Expression_cluster (116) | |||||||
Interaction | WBInteraction000536407 | ||||||
Map_info | Map | V | Position | 2.87711 | Error | 0.003354 | |
Positive | Positive_clone | F53B7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00031789 | ||||||
WBPaper00032317 | |||||||
WBPaper00032771 | |||||||
WBPaper00039427 | |||||||
WBPaper00039849 | |||||||
WBPaper00048088 | |||||||
WBPaper00049809 | |||||||
WBPaper00052744 | |||||||
WBPaper00062520 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |