WormBase Tree Display for Gene: WBGene00009648

WBGene00009648 SMap: S_parent: Sequence: CHROMOSOME_III
  Identity: Version: 3
    Name: CGC_name: zhit-2 Person_evidence: WBPerson260
      Sequence_name: F43C1.3
      Molecular_name: F43C1.3
        F43C1.3.1
        CE37012
      Other_name: CELE_F43C1.3 Accession_evidence: NDB BX284603
      Public_name: zhit-2
    DB_info: Database: AceView gene 3F334
        WormQTL gene WBGene00009648
        WormFlux gene WBGene00009648
        NDB locus_tag CELE_F43C1.3
        NCBI gene 185691
        RefSeq protein NM_065449.8
        TrEMBL UniProtAcc Q7K7S3
        UniProt_GCRP UniProtAcc Q7K7S3
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:50 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 30 Sep 2011 16:40:15 WBPerson2970 Name_change: CGC_name: zhit-2
        3 09 Jul 2004 16:15:31 WBPerson1983 Event: Split_into: WBGene00023423
      Split_into: WBGene00023422
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: zhit
    Allele: WBVar01499152
      WBVar02067474
      WBVar00820721
      WBVar00820722
      WBVar02156764
      WBVar01262854
      WBVar01262855
      WBVar01262856
    Strain: WBStrain00052121
    RNASeq_FPKM (74)
    Contained_in_operon: CEOP3164
    Ortholog (24)
    Structured_description: Concise_description: F43C1.3 encodes a protein containing an HIT-type zinc finger domain and a coiled-coil region; loss of F43C1.3 activity via RNAi results in slower than normal growth rates. Paper_evidence: WBPaper00005654
            WBPaper00006395
          Curator_confirmed: WBPerson1843
          Date_last_updated: 12 Dec 2007 00:00:00
      Automated_description: Enriched in AFD; germ line; intestine; and somatic gonad precursor based on RNA-seq and microarray studies. Is affected by several genes including eat-2; sir-2.1; and pgl-1 based on RNA-seq and microarray studies. Is affected by eight chemicals including rotenone; Cry5B; and Zidovudine based on RNA-seq studies. Is predicted to encode a protein with the following domain: Zinc finger HIT domain-containing protein 2. Is an ortholog of human ZNHIT2 (zinc finger HIT-type containing 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F43C1.3
    Corresponding_CDS_history: F43C1.3:wp128
    Corresponding_transcript: F43C1.3.1
    Other_sequence (15)
    Associated_feature: WBsf226497
  Experimental_info: RNAi_result: WBRNAi00025487 Inferred_automatically: RNAi_primary
      WBRNAi00008789 Inferred_automatically: RNAi_primary
      WBRNAi00067799 Inferred_automatically: RNAi_primary
      WBRNAi00047162 Inferred_automatically: RNAi_primary
      WBRNAi00005636 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1024801
      Expr1034212
      Expr1151023
      Expr2018133
      Expr2036270
    Microarray_results (15)
    Expression_cluster (68)
    Interaction: WBInteraction000122205
      WBInteraction000122206
      WBInteraction000267296
      WBInteraction000272666
      WBInteraction000319323
      WBInteraction000380550
      WBInteraction000421675
  Map_info: Map: III Position: -3.45547
    Positive: Positive_clone: F43C1 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene