WormBase Tree Display for Gene: WBGene00009532
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| WBGene00009532 | SMap | S_parent | Sequence | F38B7 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ccch-1 | Person_evidence | WBPerson1997 | |||||
| Sequence_name | F38B7.1 | ||||||||
| Molecular_name | F38B7.1a | ||||||||
| F38B7.1a.1 | |||||||||
| CE31933 | |||||||||
| F38B7.1b | |||||||||
| CE31934 | |||||||||
| F38B7.1b.1 | |||||||||
| Other_name | CELE_F38B7.1 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | ccch-1 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 18 Apr 2008 09:32:24 | WBPerson2970 | Name_change | CGC_name | ccch-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ccch | ||||||||
| Allele (169) | |||||||||
| Strain | WBStrain00032320 | ||||||||
| WBStrain00036997 | |||||||||
| WBStrain00037686 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00067355 | ||||||||
| 00067356 | |||||||||
| 00117183 | |||||||||
| 00117184 | |||||||||
| Ortholog (63) | |||||||||
| Paralog (20) | |||||||||
| Structured_description | Concise_description | ccch-1 encodes a CCCH tandem zinc finger (TZF) protein; based upon its sequence similarity to human tristetraprolin and ERF-2 the product of F38B7.1 is predicted to function as an RNA-binding protein that specifically binds to UAUU repeats. | Paper_evidence | WBPaper00029068 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 27 Jul 2012 00:00:00 | ||||||||
| Automated_description | Predicted to enable mRNA binding activity and metal ion binding activity. Located in sarcoplasmic reticulum. Expressed in GABAergic neurons; cholinergic neurons; head neurons; and intestine. Human ortholog(s) of this gene implicated in breast cancer. Is an ortholog of human ZFP36 (ZFP36 ring finger protein). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:1612 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12862) | ||||
| EFO:MONDO:0014769 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1108) | ||||||
| Molecular_info | Corresponding_CDS | F38B7.1a | |||||||
| F38B7.1b | |||||||||
| Corresponding_CDS_history | F38B7.1a:wp87 | ||||||||
| F38B7.1b:wp87 | |||||||||
| Corresponding_transcript | F38B7.1a.1 | ||||||||
| F38B7.1b.1 | |||||||||
| Other_sequence (27) | |||||||||
| Associated_feature (43) | |||||||||
| Transcription_factor | WBTranscriptionFactor001005 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00046693 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00107174 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00031952 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001839 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00014547 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00046692 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram576 | ||||||||
| Expr5993 | |||||||||
| Expr9409 | |||||||||
| Expr1026970 | |||||||||
| Expr1034164 | |||||||||
| Expr1150571 | |||||||||
| Expr2009750 | |||||||||
| Expr2027990 | |||||||||
| Drives_construct | WBCnstr00002490 | ||||||||
| WBCnstr00032123 | |||||||||
| Construct_product | WBCnstr00013974 | ||||||||
| WBCnstr00032123 | |||||||||
| WBCnstr00038807 | |||||||||
| Microarray_results (29) | |||||||||
| Expression_cluster (180) | |||||||||
| Interaction (17) | |||||||||
| Map_info | Map | V | Position | 3.19162 | Error | 0.002818 | |||
| Positive | Positive_clone | F38B7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031852 | ||||||||
| WBPaper00038444 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
