WormBase Tree Display for Gene: WBGene00009451
expand all nodes | collapse all nodes | view schema
WBGene00009451 | SMap | S_parent | Sequence | F36A2 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | cids | ||||||
Allele (44) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00004984 | ||||||
00004985 | |||||||
00004986 | |||||||
Ortholog (34) | |||||||
Paralog | WBGene00017004 | Caenorhabditis elegans | From_analysis | Panther | |||
WBGene00015347 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
Panther | |||||||
WormBase-Compara | |||||||
Structured_description | Concise_description | cids-2 encodes a protein that contains a CTD (C-terminal domain of RNA Pol II)-interacting domain and that is paralogous to CIDS-1; cids-2 was identified genetically as a suppressor of the SynMuv phenotype produced by lin-15AB(n765), a mutation that results in transposition of the 3'-end cleavage and polyadenylation signal of another gene into the third exon of lin-15B; qRT-PCR assays suggest that CIDS-2 plays a role in 3'-end cleavage. | Paper_evidence | WBPaper00032289 | |||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 30 Sep 2009 00:00:00 | ||||||
Automated_description | Predicted to enable RNA polymerase II complex binding activity. Involved in mRNA 3'-end processing. Is an ortholog of human RPRD2 (regulation of nuclear pre-mRNA domain containing 2). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F36A2.1a | |||||
F36A2.1b | |||||||
F36A2.1c | |||||||
F36A2.1d | |||||||
Corresponding_CDS_history | F36A2.1:wp90 | ||||||
F36A2.1a:wp151 | |||||||
F36A2.1b:wp151 | |||||||
Corresponding_transcript | F36A2.1e | ||||||
F36A2.1a.1 | |||||||
F36A2.1b.1 | |||||||
F36A2.1c.1 | |||||||
F36A2.1d.1 | |||||||
Other_sequence (14) | |||||||
Associated_feature | WBsf649420 | ||||||
WBsf981065 | |||||||
WBsf984512 | |||||||
WBsf984513 | |||||||
WBsf1010278 | |||||||
WBsf219985 | |||||||
Experimental_info | RNAi_result (12) | ||||||
Expr_pattern | Expr1018602 | ||||||
Expr1034136 | |||||||
Expr1150306 | |||||||
Expr2010012 | |||||||
Expr2028253 | |||||||
Microarray_results (29) | |||||||
Expression_cluster (121) | |||||||
Interaction (16) | |||||||
Map_info | Map | I | Position | 3.14648 | Error | 0.006318 | |
Positive | Positive_clone | F36A2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00032289 | ||||||
WBPaper00036363 | |||||||
WBPaper00041428 | |||||||
WBPaper00065308 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |