WormBase Tree Display for Gene: WBGene00009186
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| WBGene00009186 | SMap | S_parent | Sequence | F27C8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | trcs-1 | Person_evidence | WBPerson1816 | |||||
| Sequence_name | F27C8.6 | ||||||||
| Molecular_name | F27C8.6 | ||||||||
| F27C8.6.1 | |||||||||
| CE03271 | |||||||||
| Other_name | CELE_F27C8.6 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | trcs-1 | ||||||||
| DB_info | Database | AceView | gene | 4K352 | |||||
| WormQTL | gene | WBGene00009186 | |||||||
| WormFlux | gene | WBGene00009186 | |||||||
| NDB | locus_tag | CELE_F27C8.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00009186|UniProtKB=Q19839 | |||||||
| family | PTHR23024 | ||||||||
| NCBI | gene | 177791 | |||||||
| RefSeq | protein | NM_001383166.2 | |||||||
| TREEFAM | TREEFAM_ID | TF314978 | |||||||
| TrEMBL | UniProtAcc | Q19839 | |||||||
| UniProt_GCRP | UniProtAcc | Q19839 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 05 May 2011 12:15:34 | WBPerson2970 | Name_change | CGC_name | trcs-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | trcs | ||||||||
| Allele (20) | |||||||||
| Strain | WBStrain00051663 | ||||||||
| WBStrain00051676 | |||||||||
| WBStrain00055618 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00066023 | ||||||||
| 00066024 | |||||||||
| 00066025 | |||||||||
| 00066026 | |||||||||
| 00066027 | |||||||||
| 00066028 | |||||||||
| 00116958 | |||||||||
| 00116959 | |||||||||
| 00116960 | |||||||||
| Ortholog (82) | |||||||||
| Paralog | WBGene00011642 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00012810 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00012866 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00017051 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00017515 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | trcs-1 encodes a putative arylacetamide deacetylase and microsomal lipase; TRCS-1 is required for sperm to normally migrate towards a PUFA-based signal exuded by oocytes; trcs-1(RNAi) hermaphrodites are infertile, both through aberrant loss of their own sperm and through failure of males to effectively inseminate them. | Paper_evidence | WBPaper00028527 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 05 May 2011 00:00:00 | ||||||||
| Automated_description | Predicted to enable carboxylic ester hydrolase activity. Predicted to be located in membrane. Expressed in germ line. Is an ortholog of human AADACL3 (arylacetamide deacetylase like 3). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F27C8.6 | |||||||
| Corresponding_transcript | F27C8.6.1 | ||||||||
| Other_sequence (20) | |||||||||
| Associated_feature | WBsf977237 | ||||||||
| WBsf977238 | |||||||||
| WBsf230589 | |||||||||
| WBsf230590 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00013996 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00025275 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027306 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00008061 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00085624 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00045737 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00086032 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00025276 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00031493 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr4114 | ||||||||
| Expr1022646 | |||||||||
| Expr1034007 | |||||||||
| Expr1149644 | |||||||||
| Expr2017485 | |||||||||
| Expr2035624 | |||||||||
| Drives_construct | WBCnstr00032390 | ||||||||
| Construct_product | WBCnstr00032390 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (190) | |||||||||
| Interaction (232) | |||||||||
| Map_info | Map | IV | Position | 4.32212 | Error | 0.001583 | |||
| Positive | Positive_clone | F27C8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00028527 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00042257 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00057849 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
