WormBase Tree Display for Gene: WBGene00009136

WBGene00009136 SMap: S_parent: Sequence: F25H9
  Identity: Version: 2
    Name: CGC_name: lurp-3 Person_evidence: WBPerson260
      Sequence_name: F25H9.3
      Molecular_name: F25H9.3
        F25H9.3.1
        CE09660
      Other_name: CELE_F25H9.3 Accession_evidence: NDB BX284605
      Public_name: lurp-3
    DB_info: Database: AceView gene 5N935
        WormQTL gene WBGene00009136
        WormFlux gene WBGene00009136
        NDB locus_tag CELE_F25H9.3
        Panther gene CAEEL|WormBase=WBGene00009136|UniProtKB=P91986
          family PTHR37433
        NCBI gene 184942
        RefSeq protein NM_073936.2
        TREEFAM TREEFAM_ID TF316745
        TrEMBL UniProtAcc P91986
        UniProt_GCRP UniProtAcc P91986
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:49 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 17 Feb 2012 16:57:01 WBPerson2970 Name_change: CGC_name: lurp-3
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lurp
    Allele (45)
    RNASeq_FPKM (74)
    Ortholog (19)
    Paralog: WBGene00007607 Caenorhabditis elegans From_analysis: Panther
      WBGene00007907
      WBGene00007909 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00009134 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00021558 Caenorhabditis elegans From_analysis: Panther
      WBGene00077698 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00018111 Caenorhabditis elegans From_analysis: Panther
      WBGene00020144 Caenorhabditis elegans From_analysis: Panther
      WBGene00009679 Caenorhabditis elegans From_analysis: Panther
    Structured_description: Automated_description: Enriched in ADL; ADLL; ADLR; PHA; and neurons based on single-cell RNA-seq and RNA-seq studies. Is affected by several genes including sir-2.1; dpy-21; and cyc-1 based on microarray and RNA-seq studies. Is affected by multi-walled carbon nanotube; atracurium; and resveratrol based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F25H9.3
    Corresponding_transcript: F25H9.3.1
  Experimental_info: RNAi_result: WBRNAi00013895 Inferred_automatically: RNAi_primary
      WBRNAi00045563 Inferred_automatically: RNAi_primary
      WBRNAi00031407 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1028970
      Expr1149477
      Expr2013309
      Expr2031540
    Drives_construct: WBCnstr00032435
    Construct_product: WBCnstr00032435
    Microarray_results (17)
    Expression_cluster (33)
    SAGE_tag: SAGE:caataaagtg Strand: Sense
        Unambiguously_mapped
      SAGE:aaaaattagg Strand: Antisense
      SAGE:aaaaacctct Strand: Sense
        Unambiguously_mapped
    Interaction (59)
  Map_info: Map: V Position: 5.34681
    Positive: Positive_clone: F25H9 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene