WormBase Tree Display for Gene: WBGene00009134
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| WBGene00009134 | SMap | S_parent | Sequence | F25H9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | lurp-2 | Person_evidence | WBPerson260 | |||||
| Sequence_name | F25H9.1 | ||||||||
| Molecular_name | F25H9.1 | ||||||||
| F25H9.1.1 | |||||||||
| CE09658 | |||||||||
| Other_name | CELE_F25H9.1 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | lurp-2 | ||||||||
| DB_info | Database | AceView | gene | 5N933 | |||||
| WormQTL | gene | WBGene00009134 | |||||||
| WormFlux | gene | WBGene00009134 | |||||||
| NDB | locus_tag | CELE_F25H9.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00009134|UniProtKB=P91987 | |||||||
| family | PTHR37433 | ||||||||
| NCBI | gene | 184941 | |||||||
| RefSeq | protein | NM_073935.1 | |||||||
| TREEFAM | TREEFAM_ID | TF316745 | |||||||
| TrEMBL | UniProtAcc | P91987 | |||||||
| UniProt_GCRP | UniProtAcc | P91987 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 17 Feb 2012 16:57:01 | WBPerson2970 | Name_change | CGC_name | lurp-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lurp | ||||||||
| Allele (34) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (19) | |||||||||
| Paralog | WBGene00007607 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WBGene00007907 | |||||||||
| WBGene00007909 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00021558 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00009136 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00077566 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | ||||||
| WBGene00077698 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00018111 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00020144 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00009679 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Automated_description | Enriched in ADL; ADLL; ADLR; ASH; and neurons based on single-cell RNA-seq and RNA-seq studies. Is affected by several genes including sir-2.1; hpl-2; and ain-1 based on microarray and RNA-seq studies. Is affected by six chemicals including metformin; Sirolimus; and Psoralens based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Ly-6 antigen/uPA receptor-like and Snake toxin-like superfamily. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F25H9.1 | |||||||
| Corresponding_transcript | F25H9.1.1 | ||||||||
| Associated_feature | WBsf1001823 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00031406 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00013893 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00045560 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1017007 | ||||||||
| Expr1149475 | |||||||||
| Expr2013308 | |||||||||
| Expr2031539 | |||||||||
| Drives_construct | WBCnstr00032437 | ||||||||
| Construct_product | WBCnstr00032437 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (38) | |||||||||
| SAGE_tag | SAGE:tctcttgatt | Strand | Sense | ||||||
| Unambiguously_mapped | |||||||||
| SAGE:taataaatgc | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:taatacacaa | Strand | Antisense | |||||||
| SAGE:tctcttgatttatattc | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:ccctcatttt | Strand | Antisense | |||||||
| SAGE:aatttaaatt | Strand | Antisense | |||||||
| Interaction | WBInteraction000246849 | ||||||||
| WBInteraction000257254 | |||||||||
| WBInteraction000261915 | |||||||||
| WBInteraction000294087 | |||||||||
| WBInteraction000362219 | |||||||||
| WBInteraction000373113 | |||||||||
| WBInteraction000373443 | |||||||||
| WBInteraction000377582 | |||||||||
| WBInteraction000378313 | |||||||||
| WBInteraction000396882 | |||||||||
| Map_info | Map | V | Position | 5.34663 | |||||
| Positive | Positive_clone | F25H9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
